From 0b7a1102a01bd563f488f63ce9f4675c2250f587 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 16 Aug 2018 14:28:43 -0500
Subject: [PATCH] Change stress cutoff from 95% to 90%
---
r.scripts/sc-TissueMapper_RUN.D17.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/r.scripts/sc-TissueMapper_RUN.D17.R b/r.scripts/sc-TissueMapper_RUN.D17.R
index 3f2594a..31fad99 100644
--- a/r.scripts/sc-TissueMapper_RUN.D17.R
+++ b/r.scripts/sc-TissueMapper_RUN.D17.R
@@ -140,7 +140,7 @@ rm(results)
sc10x <- scCluster(sc10x,pc.use=pc.use.prestress,res.use=opt$res.prestress,folder="pre.stress")
if (opt$st==TRUE){
- results <- scStress(sc10x,stg=opt$stg,res.use=opt$res.prestress,pc.use=pc.use.prestress,cut=0.95)
+ results <- scStress(sc10x,stg=opt$stg,res.use=opt$res.prestress,pc.use=pc.use.prestress,cut=0.9)
sc10x <- results[[1]]
counts.cell.filtered.stress <- results[[2]]
sc10x.Stress <- results[[3]]
--
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