diff --git a/r.scripts/sc-TissueMapper_RUN.D17.R b/r.scripts/sc-TissueMapper_RUN.D17.R index 3f2594ac32d76e373bf172559d4f555731db0ae6..31fad995a2090f2275d19841c752d56325b62a6a 100644 --- a/r.scripts/sc-TissueMapper_RUN.D17.R +++ b/r.scripts/sc-TissueMapper_RUN.D17.R @@ -140,7 +140,7 @@ rm(results) sc10x <- scCluster(sc10x,pc.use=pc.use.prestress,res.use=opt$res.prestress,folder="pre.stress") if (opt$st==TRUE){ - results <- scStress(sc10x,stg=opt$stg,res.use=opt$res.prestress,pc.use=pc.use.prestress,cut=0.95) + results <- scStress(sc10x,stg=opt$stg,res.use=opt$res.prestress,pc.use=pc.use.prestress,cut=0.9) sc10x <- results[[1]] counts.cell.filtered.stress <- results[[2]] sc10x.Stress <- results[[3]]