Commit 5e9fc82b authored by Gervaise H. Henry's avatar Gervaise H. Henry 🤠

Add back all code in RUN

parent d37d5534
......@@ -8,20 +8,20 @@
#SBATCH --mail-type ALL
#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
#git pull origin Seurat3.0
#rm ../analysis/*.rda
#rm ../analysis/*.RData
#rm -r ../analysis/cor/
#rm -r ../analysis/qc/
#rm -r ../analysis/score_id/
#rm -r ../analysis/shiny/
#rm -r ../analysis/vis/
git pull origin Seurat3.0
rm ../analysis/*.rda
rm ../analysis/*.RData
rm -r ../analysis/cor/
rm -r ../analysis/qc/
rm -r ../analysis/score_id/
rm -r ../analysis/shiny/
rm -r ../analysis/vis/
module load python/3.6.4-anaconda
source activate umap
module load R/3.5.1-gccmkl
module load hdf5_18/1.8.17
#Rscript ../r.scripts/sc-TissueMapper_RUN.R --p "$1" --s "$2"
Rscript ../r.scripts/sc-TissueMapper_RUN.R --p "$1" --s "$2"
module unload R/3.5.1-gccmkl
module load R/3.6.1-gccmkl
......
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