Commit 5917f086 authored by Gervaise H. Henry's avatar Gervaise H. Henry 🤠

Make lin singler use fine labels

parent c8ee0098
......@@ -77,7 +77,7 @@ lin.se <- lin.se[common,]
sc10x.se <- sc10x.se[common,]
rm(common)
singler.lin <- SingleR(sc10x.se,ref=lin.se,method="cluster",clusters=sc10x.se$integrated_snn_res.5,labels=lin.se$label.main,BPPARAM=MulticoreParam(workers=10))
singler.lin <- SingleR(sc10x.se,ref=lin.se,method="cluster",clusters=sc10x.se$integrated_snn_res.5,labels=lin.se$label.fine,BPPARAM=MulticoreParam(workers=10))
sc10x$lin <- singler.lin$labels[match(sc10x.se$integrated_snn_res.5,singler.lin@rownames)]
#singler.lin <- SingleR(sc10x.se,ref=lin.se,method="single",labels=lin.se$label.main,BPPARAM=MulticoreParam(workers=10))
#sc10x$lin <- singler.lin$labels
......
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