Commits · c8ee009878b3780143d024f820a149f2231e7906 · Strand Lab / sc-TissueMapper

16 Feb, 2020 5 commits
- Use res 5 for lin in hu mu singelr · c8ee0098
  Gervaise Henry authored Feb 16, 2020
  
  c8ee0098
- Change singler to res 5 and fine · af6cb761
  Gervaise Henry authored Feb 16, 2020
  
  af6cb761
- Change threshold code to match qc thresh · dbb4d204
  Gervaise Henry authored Feb 16, 2020
  
  dbb4d204
- Add newest version (GRCm38.p6) of hu/mu orthology · 7e720ca8
  Gervaise Henry authored Feb 16, 2020
  
  7e720ca8
- Fix QC filter · 447e05b8
  Gervaise Henry authored Feb 16, 2020
  
  447e05b8
10 Feb, 2020 4 commits
- Replace pr sub plot for mu · 46b71b47
  Gervaise Henry authored Feb 10, 2020
  
  46b71b47
- Handle removed Tz cells from cust corr heatmap · 950b88d0
  Gervaise Henry authored Feb 10, 2020
  
  950b88d0
- Replace heatmap code which was accidentally removed · 069373dc
  Gervaise Henry authored Feb 10, 2020
  
  069373dc
- Fix row order for custom score heatmap · 49153fc7
  Gervaise Henry authored Feb 10, 2020
  
  49153fc7
08 Feb, 2020 2 commits
- Add back all code in RUN · 5e9fc82b
  Gervaise Henry authored Feb 08, 2020
  
  5e9fc82b
- Add NE and QuSAGE to mus DIY · d37d5534
  Gervaise Henry authored Feb 08, 2020
  
  d37d5534
05 Feb, 2020 1 commit
- Add hupop figs to mus diy · af3ad249
  Gervaise Henry authored Feb 05, 2020
  
  af3ad249
04 Feb, 2020 4 commits
- Remove unnecesary rownames from PdPgb diy degs · 266a45c8
  Gervaise Henry authored Feb 04, 2020
  
  266a45c8
- Remove Donor Tz from analysis and add DEG between Pd-Tz and Pgb · 1722636e
  Gervaise Henry authored Feb 04, 2020
  
  1722636e
- Remove stragler excluded BPH sample · 128d5c8c
  Gervaise Henry authored Feb 04, 2020
  
  128d5c8c
- Fix bash if · 76260877
  Gervaise Henry authored Feb 04, 2020
  
  76260877
03 Feb, 2020 4 commits
- Fix human corr axes labels · fa7e8908
  Gervaise Henry authored Feb 03, 2020
  
  fa7e8908
- Add custom coor plots for PdPgb · a7e3307e
  Gervaise Henry authored Feb 03, 2020
  
  a7e3307e
- Include new colorsceme to all figs · 527dfef0
  Gervaise Henry authored Feb 03, 2020
  
  527dfef0
- Cleanup · e3622098
  Gervaise Henry authored Feb 03, 2020
  
  e3622098
02 Feb, 2020 1 commit
- Add custom corr plot for singler · 638318de
  Gervaise Henry authored Feb 02, 2020
  
  638318de
28 Jan, 2020 2 commits
- Fix urethra sample label in muPrUr · 820f2d9c
  Gervaise Henry authored Jan 28, 2020
  
  820f2d9c
- Add requested figs to muPrUr diy · 7911e796
  Gervaise Henry authored Jan 28, 2020
  
  7911e796
26 Jan, 2020 2 commits
- Add pop counts to muPrUr diy · bc9f0a7f
  Gervaise Henry authored Jan 26, 2020
  
  bc9f0a7f
- Add diy figures for PdPgb · f14ccd8c
  Gervaise Henry authored Jan 26, 2020
  
  f14ccd8c
25 Jan, 2020 1 commit
- hu-mu comparison and DIY for muPrUr · 4ede93c5
  Gervaise Henry authored Jan 25, 2020
  
  4ede93c5
20 Jan, 2020 2 commits
- Fix assay = RNA for singleR · be2d10ed
  Gervaise Henry authored Jan 20, 2020
  
  be2d10ed
- Use RNA assay for singleR · 585681d4
  Gervaise Henry authored Jan 20, 2020
  
  585681d4
15 Jan, 2020 1 commit
- Fix SingleR to use Pd shallow and conver OEs to names · 7ef3c485
  Gervaise Henry authored Jan 15, 2020
  
  7ef3c485
13 Jan, 2020 3 commits
- Remove plotting HTO · 931c6d70
  Gervaise Henry authored Jan 13, 2020
  
  931c6d70
- Do percent.mito upper thresh with > max · 386058b6
  Gervaise Henry authored Jan 13, 2020
  
  386058b6
- Change Pd dataset to official shallow DWS data · 46971c3a
  Gervaise Henry authored Jan 13, 2020
  
  46971c3a
12 Jan, 2020 5 commits
- Remove HTO · f2f7e7a9
  Gervaise Henry authored Jan 12, 2020
  
  f2f7e7a9
- Add back hu stress list · 4ed5fb06
  Gervaise Henry authored Jan 12, 2020
  
  4ed5fb06
- Add back mus stress list (van.den.Brink) · 36862921
  Gervaise Henry authored Jan 12, 2020
  
  36862921
- Add Pd.shallow.Rda lfs · ae09dade
  Gervaise Henry authored Jan 12, 2020
  
  ae09dade
- Cleanup genesets · 80244122
  Gervaise Henry authored Jan 12, 2020
  
  80244122
06 Jan, 2020 3 commits
- Add muPrUr for HTO · fb6db07e
  Gervaise Henry authored Jan 06, 2020
  
  fb6db07e
- Remove shiny cacl from singler · 061755e8
  Gervaise Henry authored Jan 06, 2020
  
  061755e8
- Temp remove shiny calc · 2188599a
  Gervaise Henry authored Jan 06, 2020
  
  2188599a