Commits · c3a845d36dc46c09d0d12ec59ed0834374a9dbff · Strand Lab / sc-TissueMapper

03 Nov, 2018 2 commits
- Update README.md · c3a845d3
  Gervaise Henry authored Nov 03, 2018
  
  c3a845d3
- Update readme.md · 1bd6628c
  Gervaise Henry authored Nov 03, 2018
  
  1bd6628c
02 Nov, 2018 11 commits
- Make DEG try · 31988046
  Gervaise Henry authored Nov 02, 2018
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored Nov 02, 2018
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored Nov 02, 2018
  
  ef38fbfd
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored Nov 02, 2018
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored Nov 02, 2018
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored Nov 02, 2018
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored Nov 02, 2018
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored Nov 02, 2018
  
  5cb8b844
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored Nov 02, 2018
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored Nov 02, 2018
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored Nov 02, 2018
  
  75c4e6ce
17 Oct, 2018 1 commit
- Add % var to PC plots · 1399756b
  Gervaise Henry authored Oct 17, 2018
  
  1399756b
15 Oct, 2018 1 commit
- Merge branch 'develop' into 'master' · 8713aaa9
  Gervaise Henry authored Oct 15, 2018
```
Merge ds_D17 from develop into master

See merge request sc-TissueMapper_Pr!4
```
  8713aaa9
09 Oct, 2018 3 commits
- Fix min st cluster size for QuSAGE · 68fdeb80
  Gervaise Henry authored Oct 09, 2018
  
  68fdeb80
- Merge branch 'ds.D17' into 'develop' · dba99684
  Gervaise Henry authored Oct 09, 2018
```
Merge completed D17 downsample in to develop

See merge request sc-TissueMapper_Pr!3
```
  dba99684
- Remove depreciated code · 790d56ab
  Gervaise Henry authored Oct 09, 2018
  
  790d56ab
08 Oct, 2018 2 commits
- Add rdata save to D17 downsample aggr · 751d0a65
  Gervaise Henry authored Oct 08, 2018
  
  751d0a65
- Add D17 downsample aggrggrigate code · b326f2a7
  Gervaise Henry authored Oct 08, 2018
  
  b326f2a7
05 Oct, 2018 2 commits
- Remove low gene filter for intitial load · 2a275403
  Gervaise Henry authored Oct 05, 2018
  
  2a275403
- Remove low end cutoff for cell with low gene content · 51a83364
  Gervaise Henry authored Oct 05, 2018
  
  51a83364
04 Oct, 2018 16 commits
- Remove other merge with NE · ec340b65
  Gervaise Henry authored Oct 04, 2018
  
  ec340b65
- Remove other table with NE · 051baf70
  Gervaise Henry authored Oct 04, 2018
  
  051baf70
- Remove NE highlight · b214eeea
  Gervaise Henry authored Oct 04, 2018
  
  b214eeea
- Remove NE table · 17626741
  Gervaise Henry authored Oct 04, 2018
  
  17626741
- Remove merge with NE which was causing error · b4031301
  Gervaise Henry authored Oct 04, 2018
  
  b4031301
- Try and fix factor error with merge with set ident · fbd3525e
  Gervaise Henry authored Oct 04, 2018
  
  fbd3525e
- Try to fix occational setident issue before merge with try · 6f83e665
  Gervaise Henry authored Oct 04, 2018
  
  6f83e665
- Fix post stress res · da2d2232
  Gervaise Henry authored Oct 04, 2018
  
  da2d2232
- Up post stress resolution to 1 · 45066098
  Gervaise Henry authored Oct 04, 2018
  
  45066098
- Remove 384GB node · acbcd567
  Gervaise Henry authored Oct 04, 2018
  
  acbcd567
- Remove 128GB node · bfc1c788
  Gervaise Henry authored Oct 04, 2018
  
  bfc1c788
- Allow DS.D17 bash script to be sbatch'ed to 128BG node also · 86d0f7b9
  Gervaise Henry authored Oct 04, 2018
  
  86d0f7b9
- Merge branch 'develop' into ds.D17 · 8e5d7033
  Gervaise Henry authored Oct 04, 2018
  
  8e5d7033
- Make cell cycle violin and ridge plots for specific genes a try · 098fe606
  Gervaise Henry authored Oct 04, 2018
  
  098fe606
- Merge branch 'develop' into ds.D17 · dadee431
  Gervaise Henry authored Oct 04, 2018
  
  dadee431
- Fix downsampling in stress and ne · 17d62cb9
  Gervaise Henry authored Oct 04, 2018
  
  17d62cb9
03 Oct, 2018 2 commits
- Try to fix weird FINAL tSNE gen, double set ident · 5e152ae7
  Gervaise Henry authored Oct 03, 2018
  
  5e152ae7
- Add bash script to run r script · 1e6e3905
  Gervaise Henry authored Oct 03, 2018
  
  1e6e3905