Commits · a8a133ff2a718104a2839c47cb1752bc93108e21 · Strand Lab / sc-TissueMapper

01 Mar, 2021 1 commit
- Fix subset · a8a133ff
  Gervaise Henry authored Mar 01, 2021
  
  a8a133ff
28 Feb, 2021 3 commits
- Handle subsets if not all idents present · 82f83860
  Gervaise Henry authored Feb 28, 2021
  
  82f83860
- Add mouse options and id lin by cluster · 8bf0a96b
  Gervaise Henry authored Feb 28, 2021
  
  8bf0a96b
- Fix labels · 866f9a77
  Gervaise Henry authored Feb 28, 2021
  
  866f9a77
15 Dec, 2020 1 commit
- Update human references (to lung) and increase scAlign setting · 11e5bd18
  Gervaise Henry authored Dec 15, 2020
  
  11e5bd18
20 Nov, 2020 1 commit
- Remove tsne plotting from ID · a0defb2a
  Gervaise Henry authored Nov 20, 2020
  
  a0defb2a
19 Nov, 2020 1 commit
- Up lin id res to 2 · 74ac6ca5
  Gervaise Henry authored Nov 19, 2020
  
  74ac6ca5
13 Nov, 2020 2 commits
- Fix up mouse ID (use res 1.0 for lin) · f681be71
  Gervaise Henry authored Nov 13, 2020
  
  f681be71
- Fix up mouse ID (use res 1.0 for lin) · 37869e73
  Gervaise Henry authored Nov 13, 2020
  
  37869e73
30 Oct, 2020 2 commits
- Fix bracketing · afb7560d
  Gervaise Henry authored Oct 30, 2020
  
  afb7560d
- Change number of PC's to calculate in ID subclust based on cell # · aaebc0ef
  Gervaise Henry authored Oct 30, 2020
  
  aaebc0ef
29 Oct, 2020 1 commit
- More refactoring · 21032bfc
  Gervaise Henry authored Oct 29, 2020
  
  21032bfc
22 Oct, 2020 2 commits
- Rename SingleR · 93993360
  Gervaise Henry authored Oct 22, 2020
  
  93993360
- Clean up SingleR · 3cd662a9
  Gervaise Henry authored Oct 22, 2020
  
  3cd662a9
19 Aug, 2020 1 commit
- Fix lin res to 0.1 · 4ce5c19e
  Gervaise Henry authored Aug 19, 2020
  
  4ce5c19e
18 Aug, 2020 1 commit
- Reduce lin ID to res 0.1 · ebc2989c
  Gervaise Henry authored Aug 18, 2020
  
  ebc2989c
17 Aug, 2020 3 commits
- Fix ID call data · a1b47c22
  Gervaise Henry authored Aug 17, 2020
  
  a1b47c22
- Create h5ad's after id · ebaa08e5
  Gervaise Henry authored Aug 17, 2020
  
  ebaa08e5
- Use Pd deep for ID · 33b034b3
  Gervaise Henry authored Aug 17, 2020
  
  33b034b3
02 Mar, 2020 1 commit
- Add iPS to hu fmst · a0656c51
  Gervaise Henry authored Mar 02, 2020
  
  a0656c51
16 Feb, 2020 2 commits
- Use res 5 for lin in hu mu singelr · c8ee0098
  Gervaise Henry authored Feb 16, 2020
  
  c8ee0098
- Change singler to res 5 and fine · af6cb761
  Gervaise Henry authored Feb 16, 2020
  
  af6cb761
20 Jan, 2020 2 commits
- Fix assay = RNA for singleR · be2d10ed
  Gervaise Henry authored Jan 20, 2020
  
  be2d10ed
- Use RNA assay for singleR · 585681d4
  Gervaise Henry authored Jan 20, 2020
  
  585681d4
15 Jan, 2020 1 commit
- Fix SingleR to use Pd shallow and conver OEs to names · 7ef3c485
  Gervaise Henry authored Jan 15, 2020
  
  7ef3c485
13 Jan, 2020 1 commit
- Change Pd dataset to official shallow DWS data · 46971c3a
  Gervaise Henry authored Jan 13, 2020
  
  46971c3a
06 Jan, 2020 1 commit
- Remove shiny cacl from singler · 061755e8
  Gervaise Henry authored Jan 06, 2020
  
  061755e8
03 Oct, 2019 1 commit
- Change SingleR lin to cluster mode res 0.5 · 4f098d2c
  Gervaise Henry authored Oct 03, 2019
  
  4f098d2c
01 Oct, 2019 1 commit
- Change lin SingleR to single cell mode, and remove immgen v1 data from mouse reference · 992536a9
  Gervaise Henry authored Oct 01, 2019
  
  992536a9
28 Sep, 2019 2 commits
- Add Tissue_stem_cells to FMSt SingleR · a11f3253
  Gervaise Henry authored Sep 28, 2019
  
  a11f3253
- Change Lin SingleR res to 0.1 · c3bb6eb6
  Gervaise Henry authored Sep 28, 2019
  
  c3bb6eb6
18 Sep, 2019 1 commit
- Run filters consecutively · 5d1064b7
  Gervaise Henry authored Sep 18, 2019
  
  5d1064b7
16 Sep, 2019 2 commits
- Remove monocle from library load for singler · e684cfb5
  Gervaise Henry authored Sep 16, 2019
  
  e684cfb5
- Finish shiny output for raw and id including deg · da218911
  Gervaise Henry authored Sep 16, 2019
  
  da218911
12 Sep, 2019 1 commit
- Add back ribo cutoff, set res for lin singler to 1 · ba638858
  Gervaise Henry authored Sep 12, 2019
  
  ba638858
11 Sep, 2019 1 commit
- Add back a total filtered object to run and lower res for lin singler id to 0.1 · b9e9740f
  Gervaise Henry authored Sep 11, 2019
  
  b9e9740f
09 Sep, 2019 2 commits
- Change lin SingleR res to 0.5 · f753547f
  Gervaise Henry authored Sep 09, 2019
  
  f753547f
- Change resolution from 5 to 1 for lin SingleR · a6795c4b
  Gervaise Henry authored Sep 09, 2019
  
  a6795c4b
05 Sep, 2019 2 commits
- Fix Pr SingleR · 2ebc18b1
  Gervaise Henry authored Sep 05, 2019
  
  2ebc18b1
- Generalize subset St · 00b3b797
  Gervaise Henry authored Sep 05, 2019
  
  00b3b797