Commits · a8a133ff2a718104a2839c47cb1752bc93108e21 · Strand Lab / sc-TissueMapper

01 Mar, 2021 1 commit
- Fix subset · a8a133ff
  Gervaise Henry authored Mar 01, 2021
  
  a8a133ff
28 Feb, 2021 3 commits
- Handle subsets if not all idents present · 82f83860
  Gervaise Henry authored Feb 28, 2021
  
  82f83860
- Add mouse options and id lin by cluster · 8bf0a96b
  Gervaise Henry authored Feb 28, 2021
  
  8bf0a96b
- Fix labels · 866f9a77
  Gervaise Henry authored Feb 28, 2021
  
  866f9a77
22 Feb, 2021 3 commits
- Add back ribo filter · 61083fb1
  Gervaise Henry authored Feb 22, 2021
  
  61083fb1
- Change ribo lower cutoff to 10% and change thresh scale to 0-255 · 8ee45ed4
  Gervaise Henry authored Feb 22, 2021
  
  8ee45ed4
- Revert nFeature lower cutoff to 200 · 36f0c834
  Gervaise Henry authored Feb 22, 2021
  
  36f0c834
18 Feb, 2021 1 commit
- Change nFeature lower cutoff to 1000 · 514afab2
  Gervaise Henry authored Feb 18, 2021
  
  514afab2
12 Feb, 2021 1 commit
- Fix stress/sample · a41f332f
  Gervaise Henry authored Feb 12, 2021
  
  a41f332f
10 Feb, 2021 1 commit
- Add hard cutoff for nCount and a bunch of small stuff · 7536f089
  Gervaise Henry authored Feb 10, 2021
  
  7536f089
01 Feb, 2021 7 commits
- Replace left over hardwired merge · 66e90556
  Gervaise Henry authored Feb 01, 2021
  
  66e90556
- Fix merge param · 28e1dff3
  Gervaise Henry authored Feb 01, 2021
  
  28e1dff3
- Double [] for merge arg · 21ef43a5
  Gervaise Henry authored Feb 01, 2021
  
  21ef43a5
- Remove python load from bash · 92c1a74a
  Gervaise Henry authored Feb 01, 2021
  
  92c1a74a
- Fix opt args · 7870fe92
  Gervaise Henry authored Feb 01, 2021
  
  7870fe92
- Accept merge group from args · cbf5b349
  Gervaise Henry authored Feb 01, 2021
  
  cbf5b349
- Significant edits · 7c902417
  Gervaise Henry authored Feb 01, 2021
  
  7c902417
15 Dec, 2020 1 commit
- Update human references (to lung) and increase scAlign setting · 11e5bd18
  Gervaise Henry authored Dec 15, 2020
  
  11e5bd18
20 Nov, 2020 1 commit
- Remove tsne plotting from ID · a0defb2a
  Gervaise Henry authored Nov 20, 2020
  
  a0defb2a
19 Nov, 2020 7 commits
- Up lin id res to 2 · 74ac6ca5
  Gervaise Henry authored Nov 19, 2020
  
  74ac6ca5
- Remove tsne from stress figs · 6356ce6b
  Gervaise Henry authored Nov 19, 2020
  
  6356ce6b
- Reduce n.neighbors for umap calc base on cell # · 667b5255
  Gervaise Henry authored Nov 19, 2020
  
  667b5255
- Fix print umap only · 72d56204
  Gervaise Henry authored Nov 19, 2020
  
  72d56204
- Stop caclulating tsne · 40b5287d
  Gervaise Henry authored Nov 19, 2020
  
  40b5287d
- Add dynamic component calculation based on cell number (RAW) · 42ab2961
  Gervaise Henry authored Nov 19, 2020
  
  42ab2961
- Remove IsoModes from thresh · f83b35f5
  Gervaise Henry authored Nov 19, 2020
  
  f83b35f5
13 Nov, 2020 2 commits
- Fix up mouse ID (use res 1.0 for lin) · f681be71
  Gervaise Henry authored Nov 13, 2020
  
  f681be71
- Fix up mouse ID (use res 1.0 for lin) · 37869e73
  Gervaise Henry authored Nov 13, 2020
  
  37869e73
12 Nov, 2020 1 commit
- Add lower % ribo filter · e4c882e5
  Gervaise Henry authored Nov 12, 2020
  
  e4c882e5
11 Nov, 2020 3 commits
- Fix merge · 7a5d958b
  Gervaise Henry authored Nov 11, 2020
  
  7a5d958b
- Split cutoff figs by sample names · c8a38d4a
  Gervaise Henry authored Nov 11, 2020
  
  c8a38d4a
- Make sure sample names get set if loading from premade seurat objects · e2689018
  Gervaise Henry authored Nov 11, 2020
  
  e2689018
10 Nov, 2020 1 commit
- Specify assay and slot for QUSAGE · bb5be9b8
  Gervaise Henry authored Nov 10, 2020
  
  bb5be9b8
30 Oct, 2020 2 commits
- Fix bracketing · afb7560d
  Gervaise Henry authored Oct 30, 2020
  
  afb7560d
- Change number of PC's to calculate in ID subclust based on cell # · aaebc0ef
  Gervaise Henry authored Oct 30, 2020
  
  aaebc0ef
29 Oct, 2020 5 commits
- Rename r.script RUN to RAW · da792c49
  Gervaise Henry authored Oct 29, 2020
  
  da792c49
- Reduce PC# for prestress to 100 · 1bce6540
  Gervaise Henry authored Oct 29, 2020
  
  1bce6540
- Update RUN batch · 02358439
  Gervaise Henry authored Oct 29, 2020
  
  02358439
- Update RUN bash · dc11eb77
  Gervaise Henry authored Oct 29, 2020
  
  dc11eb77
- More refactoring · 21032bfc
  Gervaise Henry authored Oct 29, 2020
  
  21032bfc