Commits · 46c8acdb650275a4182811491429fd25f78af056 · Strand Lab / sc-TissueMapper

12 Jan, 2019 2 commits
- Remove more as.matrix to prevent memory errors · 46c8acdb
  Gervaise Henry authored Jan 12, 2019
  
  46c8acdb
- Fix %mito calculation to use the data as sparse matrix so it will not cause memory error · d5bfc948
  Gervaise Henry authored Jan 12, 2019
  
  d5bfc948
11 Jan, 2019 1 commit
- Working initial version: works with Pd · 393ed35d
  Gervaise Henry authored Jan 11, 2019
  
  393ed35d
07 Dec, 2018 1 commit
- Remove historical files and save analysis/DATA subdir · e492acbc
  Gervaise Henry authored Dec 07, 2018
  
  e492acbc
18 Nov, 2018 1 commit
- Use all cells for lung liniage QuSAGE · 69739b22
  Gervaise Henry authored Nov 18, 2018
  
  69739b22
10 Nov, 2018 1 commit
- Revert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGE · ca6ba2ef
  Gervaise Henry authored Nov 10, 2018
  
  ca6ba2ef
06 Nov, 2018 1 commit
- Decrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACS · 0f6497ca
  Gervaise Henry authored Nov 06, 2018
  
  0f6497ca
05 Nov, 2018 1 commit
- Filter pop specific genes from pan Epi and St DEGs · fc1e27a3
  Gervaise Henry authored Nov 05, 2018
  
  fc1e27a3
04 Nov, 2018 2 commits
- Don't downsample FACS analysis · e42b9eea
  Gervaise Henry authored Nov 04, 2018
  
  e42b9eea
- Revert Epi and St dws.sc genesets and how they are generated · 988b20ad
  Gervaise Henry authored Nov 04, 2018
  
  988b20ad
03 Nov, 2018 2 commits
- Fix output folders for StressCompare and add to Pd.sh · 696ac6fb
  Gervaise Henry authored Nov 03, 2018
  
  696ac6fb
- Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC · c0718701
  Gervaise Henry authored Nov 03, 2018
  
  c0718701
02 Nov, 2018 7 commits
- Make DEG try · 31988046
  Gervaise Henry authored Nov 02, 2018
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored Nov 02, 2018
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored Nov 02, 2018
  
  ef38fbfd
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored Nov 02, 2018
  
  ed753d6e
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored Nov 02, 2018
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored Nov 02, 2018
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored Nov 02, 2018
  
  75c4e6ce
17 Oct, 2018 2 commits
- Add % var to PC plots · 1399756b
  Gervaise Henry authored Oct 17, 2018
  
  1399756b
- Finalize? stress comparisson (van den Brink) code · a684c35f
  Gervaise Henry authored Oct 17, 2018
  
  a684c35f
09 Oct, 2018 2 commits
- Fix min st cluster size for QuSAGE · 68fdeb80
  Gervaise Henry authored Oct 09, 2018
  
  68fdeb80
- Remove depreciated code · 790d56ab
  Gervaise Henry authored Oct 09, 2018
  
  790d56ab
08 Oct, 2018 2 commits
- Add rdata save to D17 downsample aggr · 751d0a65
  Gervaise Henry authored Oct 08, 2018
  
  751d0a65
- Add D17 downsample aggrggrigate code · b326f2a7
  Gervaise Henry authored Oct 08, 2018
  
  b326f2a7
05 Oct, 2018 2 commits
- Remove low gene filter for intitial load · 2a275403
  Gervaise Henry authored Oct 05, 2018
  
  2a275403
- Remove low end cutoff for cell with low gene content · 51a83364
  Gervaise Henry authored Oct 05, 2018
  
  51a83364
04 Oct, 2018 11 commits
- Remove other merge with NE · ec340b65
  Gervaise Henry authored Oct 04, 2018
  
  ec340b65
- Remove other table with NE · 051baf70
  Gervaise Henry authored Oct 04, 2018
  
  051baf70
- Remove NE highlight · b214eeea
  Gervaise Henry authored Oct 04, 2018
  
  b214eeea
- Remove NE table · 17626741
  Gervaise Henry authored Oct 04, 2018
  
  17626741
- Remove merge with NE which was causing error · b4031301
  Gervaise Henry authored Oct 04, 2018
  
  b4031301
- Try and fix factor error with merge with set ident · fbd3525e
  Gervaise Henry authored Oct 04, 2018
  
  fbd3525e
- Try to fix occational setident issue before merge with try · 6f83e665
  Gervaise Henry authored Oct 04, 2018
  
  6f83e665
- Fix post stress res · da2d2232
  Gervaise Henry authored Oct 04, 2018
  
  da2d2232
- Up post stress resolution to 1 · 45066098
  Gervaise Henry authored Oct 04, 2018
  
  45066098
- Make cell cycle violin and ridge plots for specific genes a try · 098fe606
  Gervaise Henry authored Oct 04, 2018
  
  098fe606
- Fix downsampling in stress and ne · 17d62cb9
  Gervaise Henry authored Oct 04, 2018
  
  17d62cb9
03 Oct, 2018 1 commit
- Try to fix weird FINAL tSNE gen, double set ident · 5e152ae7
  Gervaise Henry authored Oct 03, 2018
  
  5e152ae7
02 Oct, 2018 1 commit
- Add code for DS.D17 · 0b5eec53
  Gervaise Henry authored Oct 02, 2018
  
  0b5eec53