Commits · 21ef43a511ec3143af4c2650cb4db016ed8d5402 · Strand Lab / sc-TissueMapper

01 Feb, 2021 5 commits
- Double [] for merge arg · 21ef43a5
  Gervaise Henry authored Feb 01, 2021
  
  21ef43a5
- Remove python load from bash · 92c1a74a
  Gervaise Henry authored Feb 01, 2021
  
  92c1a74a
- Fix opt args · 7870fe92
  Gervaise Henry authored Feb 01, 2021
  
  7870fe92
- Accept merge group from args · cbf5b349
  Gervaise Henry authored Feb 01, 2021
  
  cbf5b349
- Significant edits · 7c902417
  Gervaise Henry authored Feb 01, 2021
  
  7c902417
15 Dec, 2020 1 commit
- Update human references (to lung) and increase scAlign setting · 11e5bd18
  Gervaise Henry authored Dec 15, 2020
  
  11e5bd18
20 Nov, 2020 1 commit
- Remove tsne plotting from ID · a0defb2a
  Gervaise Henry authored Nov 20, 2020
  
  a0defb2a
19 Nov, 2020 7 commits
- Up lin id res to 2 · 74ac6ca5
  Gervaise Henry authored Nov 19, 2020
  
  74ac6ca5
- Remove tsne from stress figs · 6356ce6b
  Gervaise Henry authored Nov 19, 2020
  
  6356ce6b
- Reduce n.neighbors for umap calc base on cell # · 667b5255
  Gervaise Henry authored Nov 19, 2020
  
  667b5255
- Fix print umap only · 72d56204
  Gervaise Henry authored Nov 19, 2020
  
  72d56204
- Stop caclulating tsne · 40b5287d
  Gervaise Henry authored Nov 19, 2020
  
  40b5287d
- Add dynamic component calculation based on cell number (RAW) · 42ab2961
  Gervaise Henry authored Nov 19, 2020
  
  42ab2961
- Remove IsoModes from thresh · f83b35f5
  Gervaise Henry authored Nov 19, 2020
  
  f83b35f5
13 Nov, 2020 2 commits
- Fix up mouse ID (use res 1.0 for lin) · f681be71
  Gervaise Henry authored Nov 13, 2020
  
  f681be71
- Fix up mouse ID (use res 1.0 for lin) · 37869e73
  Gervaise Henry authored Nov 13, 2020
  
  37869e73
12 Nov, 2020 1 commit
- Add lower % ribo filter · e4c882e5
  Gervaise Henry authored Nov 12, 2020
  
  e4c882e5
11 Nov, 2020 3 commits
- Fix merge · 7a5d958b
  Gervaise Henry authored Nov 11, 2020
  
  7a5d958b
- Split cutoff figs by sample names · c8a38d4a
  Gervaise Henry authored Nov 11, 2020
  
  c8a38d4a
- Make sure sample names get set if loading from premade seurat objects · e2689018
  Gervaise Henry authored Nov 11, 2020
  
  e2689018
10 Nov, 2020 1 commit
- Specify assay and slot for QUSAGE · bb5be9b8
  Gervaise Henry authored Nov 10, 2020
  
  bb5be9b8
30 Oct, 2020 2 commits
- Fix bracketing · afb7560d
  Gervaise Henry authored Oct 30, 2020
  
  afb7560d
- Change number of PC's to calculate in ID subclust based on cell # · aaebc0ef
  Gervaise Henry authored Oct 30, 2020
  
  aaebc0ef
29 Oct, 2020 5 commits
- Rename r.script RUN to RAW · da792c49
  Gervaise Henry authored Oct 29, 2020
  
  da792c49
- Reduce PC# for prestress to 100 · 1bce6540
  Gervaise Henry authored Oct 29, 2020
  
  1bce6540
- Update RUN batch · 02358439
  Gervaise Henry authored Oct 29, 2020
  
  02358439
- Update RUN bash · dc11eb77
  Gervaise Henry authored Oct 29, 2020
  
  dc11eb77
- More refactoring · 21032bfc
  Gervaise Henry authored Oct 29, 2020
  
  21032bfc
22 Oct, 2020 3 commits
- Add assay to FindNeighbors · fcfc7fa9
  Gervaise Henry authored Oct 22, 2020
  
  fcfc7fa9
- Rename SingleR · 93993360
  Gervaise Henry authored Oct 22, 2020
  
  93993360
- Clean up SingleR · 3cd662a9
  Gervaise Henry authored Oct 22, 2020
  
  3cd662a9
19 Oct, 2020 1 commit
- Finalize stress removal before align · 14ae840e
  Gervaise Henry authored Oct 19, 2020
  
  14ae840e
07 Oct, 2020 1 commit
- Mod fitering/align anchors/pca numbers · e2110a4e
  Gervaise Henry authored Oct 07, 2020
  
  e2110a4e
19 Aug, 2020 1 commit
- Fix lin res to 0.1 · 4ce5c19e
  Gervaise Henry authored Aug 19, 2020
  
  4ce5c19e
18 Aug, 2020 1 commit
- Reduce lin ID to res 0.1 · ebc2989c
  Gervaise Henry authored Aug 18, 2020
  
  ebc2989c
17 Aug, 2020 4 commits
- Fix ID call data · a1b47c22
  Gervaise Henry authored Aug 17, 2020
  
  a1b47c22
- Create h5ad's after id · ebaa08e5
  Gervaise Henry authored Aug 17, 2020
  
  ebaa08e5
- Use Pd deep for ID · 33b034b3
  Gervaise Henry authored Aug 17, 2020
  
  33b034b3
- Start refactor RUN · 087770ca
  Gervaise Henry authored Aug 17, 2020
  
  087770ca
29 Jun, 2020 1 commit
- Fix nCount lower threshold · 94067e3e
  Gervaise Henry authored Jun 29, 2020
  
  94067e3e