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Strand Lab
sc-TissueMapper
Commits
f259f6e2
Commit
f259f6e2
authored
Sep 22, 2019
by
Gervaise Henry
🤠
Browse files
Fix dehash display
parent
305c7585
Changes
1
Show whitespace changes
Inline
Side-by-side
r.scripts/sc-TissueMapper_functions.R
View file @
f259f6e2
...
...
@@ -664,7 +664,7 @@ scCluster <- function(sc10x,res=0.1,red="pca",dim,print="tsne",folder=FALSE){
dev.off
()
}}
for
(
i
in
c
(
"samples"
,
"HTO_maxID"
,
"hashID"
)[
c
(
"samples"
,
"HTO_maxID"
,
"hash.ID"
)
%in%
colnames
(
sc10x
@
meta.data
)]){
for
(
i
in
c
(
"samples"
,
"HTO_maxID"
,
"hash
.
ID"
)[
c
(
"samples"
,
"HTO_maxID"
,
"hash.ID"
)
%in%
colnames
(
sc10x
@
meta.data
)]){
plot1
<-
DimPlot
(
sc10x
,
reduction
=
"pca"
,
group.by
=
i
)
plot2
<-
DimPlot
(
sc10x
,
reduction
=
"tsne"
,
group.by
=
i
)
plot3
<-
DimPlot
(
sc10x
,
reduction
=
"umap"
,
group.by
=
i
)
...
...
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