Commit dc11eb77 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Update RUN bash

parent 21032bfc
......@@ -8,18 +8,11 @@
#SBATCH --mail-type ALL
#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
rm ../analysis/*.rda
rm ../analysis/*.rds
rm ../analysis/*.RData
rm -r ../analysis/cor/
rm -r ../analysis/qc/
rm -r ../analysis/score_id/
rm -r ../analysis/shiny/
rm -r ../analysis/vis/
module load python/3.6.4-anaconda
source activate umap
module load R/3.6.1-gccmkl
module load gdal
module load cairo/1.14.8
module load R/3.6.1-gccmkl
module load hdf5_18/1.8.17
Rscript ../r.scripts/sc-TissueMapper_RUN.R --p "$1" --s "$2"
Rscript ../r.scripts/SingleR.R --p "$1" --s "$2" --o "$3"
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