Commit c3a845d3 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Update README.md

parent 1bd6628c
...@@ -12,7 +12,7 @@ Determining cellular heterogeneity in the human prostate with single-cell RNA se ...@@ -12,7 +12,7 @@ Determining cellular heterogeneity in the human prostate with single-cell RNA se
* PI Email: [douglas.strand@utsouthwestern.edu](mailto:douglas.strand@utsouthwestern.edu) * PI Email: [douglas.strand@utsouthwestern.edu](mailto:douglas.strand@utsouthwestern.edu)
* **ANALYZED DATA FOR QUERYING AT: [StrandLab.net](http://strandlab.net/analysis.php)** * **ANALYZED DATA FOR QUERYING AT: [StrandLab.net](http://strandlab.net/analysis.php)**
* **Raw data at: [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120716) & [GenitoUrinary Development Molecular Anatomy Project (GUDMAP)]("https://doi.org/10.25548/W-R8CM")** * **Raw data at: [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120716) & [GenitoUrinary Development Molecular Anatomy Project (GUDMAP)]("https://doi.org/10.25548/W-R8CM")**
* **Publication at: (BioRxiv)[https://www.biorxiv.org/content/early/2018/10/15/439935]** * **Publication at: [BioRxiv](https://www.biorxiv.org/content/early/2018/10/15/439935)**
Data Analysis Data Analysis
------------- -------------
...@@ -53,7 +53,7 @@ Data Analysis ...@@ -53,7 +53,7 @@ Data Analysis
* 4 Run on several downsamples from 1 sample from 1st patient * 4 Run on several downsamples from 1 sample from 1st patient
* run bash script [sc\_TissueMapper\-DS\_D17.sh](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/bash.scripts/sc_TissueMapper-DS_D17.sh) * run bash script [sc\_TissueMapper\-DS\_D17.sh](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/bash.scripts/sc_TissueMapper-DS_D17.sh)
* 5 Aggregate and compare several downsamples from #4 * 5 Aggregate and compare several downsamples from #4
* run bash script [sc\_TissueMapper\-DS\_D17.aggr.sh](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/bash.scripts/sc_TissueMapper-DS_D17.aggr.sh) * run bash script [sc\_TissueMapper\_RUN.DS\_D17.aggr.R](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/r.scripts/sc_TissueMapper_RUN.DS_D17.aggr.R)
* **Pipeline:** * **Pipeline:**
* Link cellranger count/aggr output to analysis * Link cellranger count/aggr output to analysis
* Create demultiplex file to add custom sample groups * Create demultiplex file to add custom sample groups
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment