Commit c0718701 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC

parent c3a845d3
......@@ -409,8 +409,8 @@ scTables(sc10x,i.1="Merge_Epi.dws_St.go_NE",i.2="Merge_Epi.dws_St.go")
genes.deg.Stress <- scDEG(sc10x.Stress,i="Stress",g.1="Stress",g.2="ALL",pct=0.5,t=5)
genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2)
genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",pct=0.75,t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",pct=0.75,t=2)
genes.deg.BE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="BE",g.2=c("LE","OE1","OE2"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="LE",g.2=c("BE","OE1","OE2"),pct=0.25,t=2)
......
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