Commit 5af3d377 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Fix LE DEG generation for Pd analysis

parent 3861d456
......@@ -10,3 +10,4 @@ WR/
*~
temp_png.png
Rplots.pdf
stress/*
......@@ -11,6 +11,8 @@ library(monocle)
library(dplyr)
library(viridis)
options(bitmapType="cairo")
source("../r.scripts/sc-TissueMapper.R")
#Create folder structure
......@@ -411,7 +413,7 @@ genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2)
genes.deg.BE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="BE",g.2=c("LE","OE1","OE2"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="LE",g.2=c("BE","LE","OE1"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="LE",g.2=c("BE","OE1","OE2"),pct=0.25,t=2)
genes.deg.OE1 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="OE1",g.2=c("BE","LE","OE2"),pct=0.25,t=2)
genes.deg.OE2 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sub",g.1="OE2",g.2=c("BE","LE","OE1"),pct=0.25,t=2)
......
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