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Strand Lab
sc-TissueMapper
Commits
0d605c79
Commit
0d605c79
authored
Jan 12, 2019
by
Gervaise Henry
🤠
Browse files
Remove ridge plot for cell cycle anchors
parent
abc34a97
Changes
1
Hide whitespace changes
Inline
Side-by-side
r.scripts/sc-TissueMapper_functions.R
View file @
0d605c79
...
...
@@ -213,10 +213,6 @@ scCellCycle <- function(sc10x,sub=FALSE){
#plot cell cycle specific genes
genes
=
c
(
"PCNA"
,
"TOP2A"
,
"MCM6"
,
"MKI67"
)
postscript
(
paste0
(
folder
,
"Ridge_cc.Raw.eps"
))
plot
<-
RidgePlot
(
object
=
sc10x
,
features
=
genes
,
log
=
TRUE
,
ncol
=
2
)
plot
(
plot
)
dev.off
()
postscript
(
paste0
(
folder
,
"Violin_cc.Raw.eps"
))
plot
<-
VlnPlot
(
object
=
sc10x
,
features
=
genes
,
ncol
=
2
,
pt.size
=
1
)
plot
(
plot
)
...
...
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