From b4c08f18efc29c91f5c82918a23aab7b6662ca4a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 1 Jan 2020 15:25:50 -0600
Subject: [PATCH] Change back to GHH S3 hosted data, and hide donor huPr
shallow data
---
content/sc.data/hu.donor.pr.deep.md | 4 ++--
content/sc.data/hu.donor.pr.shallow.md | 2 +-
layouts/custom/hu.donor.deep.html | 8 ++++----
3 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/content/sc.data/hu.donor.pr.deep.md b/content/sc.data/hu.donor.pr.deep.md
index 07d7608..6072765 100644
--- a/content/sc.data/hu.donor.pr.deep.md
+++ b/content/sc.data/hu.donor.pr.deep.md
@@ -1,7 +1,7 @@
---
-title: "Human Donor Prostate (deep)"
+title: "Human Donor Prostate"
description: "Single-Cell RNA-sequencing Data"
-name: "Human Donor (additional sequencing depth of data published in Henry GH. et al, Cell Reports,2018)"
+name: "Human Donor (additional sequencing depth of data published in Henry GH. et al, Cell Reports,2018 and projected in UMAP space)"
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "1"
diff --git a/content/sc.data/hu.donor.pr.shallow.md b/content/sc.data/hu.donor.pr.shallow.md
index 03573b5..8ff1d8a 100644
--- a/content/sc.data/hu.donor.pr.shallow.md
+++ b/content/sc.data/hu.donor.pr.shallow.md
@@ -3,7 +3,7 @@ title: "Human Donor Prostate (shallow)"
description: "Single-Cell RNA-sequencing Data"
name: "Human Donor (original sequencing depth published in Henry GH. et al, Cell Reports,2018)"
date: 2019-12-24T21:46:39-06:00
-draft: false
+draft: true
weight: "2"
type: "custom"
layout: "hu.donor.shallow"
diff --git a/layouts/custom/hu.donor.deep.html b/layouts/custom/hu.donor.deep.html
index 5a16d4d..6c253b5 100644
--- a/layouts/custom/hu.donor.deep.html
+++ b/layouts/custom/hu.donor.deep.html
@@ -94,7 +94,7 @@
the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can
be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the
- result of additional sequencing done on the same samples post publication.
+ result of additional sequencing done on the same samples post publication, and projected in UMAP space.
</span>
</div>
</div>
@@ -178,13 +178,13 @@
document.getElementById("label.populations").innerHTML = "Separated by " + $("#populations").val().toUpperCase()
document.getElementById("label.ClusterVis").innerHTML = "Cluster Visualization"
var img = document.getElementById("img.ClusterVis");
- img.src = "https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/" + $("#populations").val() + "/umap.png"
+ img.src = "https://s3.us-east-2.amazonaws.com/images.gse117403.deep/images/" + $("#populations").val() + "/umap.png"
document.getElementById("label.Feature").innerHTML = "Feature Plot"
var img = document.getElementById("img.Feature");
- img.src = "https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/umap/" + "genes/" + _gene + "_1.png"
+ img.src = "https://s3.us-east-2.amazonaws.com/images.gse117403.deep/images/umap/" + "genes/" + _gene + "_1.png"
document.getElementById("label.ViolinBox").innerHTML = "Violin Box Plot"
var img = document.getElementById("img.ViolinBox");
- img.src = "https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/ViolinBox/" + $("#populations").val() + "/genes/" + _gene + "_1.png"
+ img.src = "https://s3.us-east-2.amazonaws.com/images.gse117403.deep/images/ViolinBox/" + $("#populations").val() + "/genes/" + _gene + "_1.png"
return (_gene)
});
</script>
--
GitLab