diff --git a/archetypes/sc.data.md b/archetypes/sc.data.md index 02b90162daa057569d1ff0eeb38d5431f10b1f1d..d3f009c4080cb33945fe4ad72096c55cf9d3b632 100644 --- a/archetypes/sc.data.md +++ b/archetypes/sc.data.md @@ -7,7 +7,10 @@ draft: true weight: "" type: "custom" layout: "" +cellxgene: false +cxg_link: "" current: true +location: "" --- **PENDING** \ No newline at end of file diff --git a/content/sc.data/PdPgb.md b/content/sc.data/PdPgb.md index 5d3d398a6fd1579096a19ce4de4190ac9ba23926..91faaa1009c1a8e0de33c067af6fc12bdd8c05a8 100644 --- a/content/sc.data/PdPgb.md +++ b/content/sc.data/PdPgb.md @@ -7,5 +7,8 @@ draft: false weight: "2" type: "custom" layout: "hu.PdPgb" +cellxgene: false +cxg_link: "" current: true +location: "" --- diff --git a/content/sc.data/cellxgene_2018CellReports.md b/content/sc.data/cellxgene_2018CellReports.md deleted file mode 100644 index 6be3f184c90c8eafb10a4bc03e6b65ad4cb62aa5..0000000000000000000000000000000000000000 --- a/content/sc.data/cellxgene_2018CellReports.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: "Human Normal Prostate" -description: "As published in 2018 Cell Reports (cellxgene: in development)" -name: "Human Normal Prostate: As published in 2018 Cell Reports" -date: 2019-12-24T21:46:39-06:00 -draft: false -weight: "2" -type: "custom" -layout: "cellxgene" -current: false -location: "PublishedData/2018CellReports/2018CellReports_huPr_all" ---- - diff --git a/content/sc.data/cellxgene_2020Prostate.PdPgb.md b/content/sc.data/cellxgene_2020Prostate.PdPgb.md deleted file mode 100644 index 96643b709d614c0f3f746a7b4e891cb5adbe8136..0000000000000000000000000000000000000000 --- a/content/sc.data/cellxgene_2020Prostate.PdPgb.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: "Human Normal and BPH Prostate Epithelia" -description: ": As published in 2020 Prostate (cellxgene: in development)" -name: "Human Normal and BPH Prostate Epithelia: As published in 2020 Prostate" -date: 2019-12-24T21:46:39-06:00 -draft: false -weight: "3" -type: "custom" -layout: "cellxgene" -current: false -location: "PublishedData/2020Prostate/2020Prostate_huPr_PdPgb_epi" ---- - diff --git a/content/sc.data/cellxgene_2020Prostate.muPrUr.md b/content/sc.data/cellxgene_2020Prostate.muPrUr.md deleted file mode 100644 index 8bd60a7cca5024863d86f7389f2251553efed318..0000000000000000000000000000000000000000 --- a/content/sc.data/cellxgene_2020Prostate.muPrUr.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: "Mouse Prostate and Urethral Epithelia" -description: "As published in 2020 Prostate (cellxgene: in development)" -name: "Mouse Prostate and Urethral Epithelia: As published in 2020 Prostate" -date: 2019-12-24T21:46:39-06:00 -draft: false -weight: "4" -type: "custom" -layout: "cellxgene" -current: false -location: "PublishedData/2020Prostate/2020Prostate_muPrUr_epi" ---- - diff --git a/content/sc.data/cellxgene_hu.Pd.deep.md b/content/sc.data/cellxgene_hu.Pd.deep.md deleted file mode 100644 index 9f6638de7dfd53e856a9fba938ced1640e098467..0000000000000000000000000000000000000000 --- a/content/sc.data/cellxgene_hu.Pd.deep.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: "Human Normal Prostate" -description: "Deep Sequencing (cellxgene: in development)" -name: "Human Normal Prostate: Deep Sequencing" -date: 2019-12-24T21:46:39-06:00 -draft: false -weight: "1" -type: "custom" -layout: "cellxgene" -current: false -location: "huPr_DEEP/huPr_Pd_all" ---- - diff --git a/content/sc.data/cellxgene_huPr_PdPgb_epi.md b/content/sc.data/cellxgene_huPr_PdPgb_epi.md new file mode 100644 index 0000000000000000000000000000000000000000..4da2cb706153efe0c6f22af433adef3af4e7265b --- /dev/null +++ b/content/sc.data/cellxgene_huPr_PdPgb_epi.md @@ -0,0 +1,15 @@ +--- +title: "Human Normal and BPH Prostate: Epithelial Cells" +description: "As published in 2020 Prostate (cellxgene)" +name: "Human Normal and BPH Prostate: Epithelial Cells" +date: 2019-12-24T21:46:39-06:00 +draft: false +weight: "4" +type: "custom" +layout: "cellxgene" +cellxgene: true +cxg_link: "https://cellxgene.cziscience.com/d/599b5549-3611-41e1-884f-d5c16b2efd31.cxg/" +current: true +location: "" +--- + diff --git a/content/sc.data/cellxgene_huPr_Pd_all.md b/content/sc.data/cellxgene_huPr_Pd_all.md new file mode 100644 index 0000000000000000000000000000000000000000..164132b4dffe5dc71980b82c026829cac6ef275c --- /dev/null +++ b/content/sc.data/cellxgene_huPr_Pd_all.md @@ -0,0 +1,15 @@ +--- +title: "Human Normal Prostate: All Cells" +description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)" +name: "Human Normal Prostate: All Cells" +date: 2019-12-24T21:46:39-06:00 +draft: false +weight: "1" +type: "custom" +layout: "cellxgene" +cellxgene: true +cxg_link: "https://cellxgene.cziscience.com/d/dd811609-3d83-4bdb-801f-d6c6c93d1a9e.cxg/" +current: true +location: "" +--- + diff --git a/content/sc.data/cellxgene_huPr_Pd_epi.md b/content/sc.data/cellxgene_huPr_Pd_epi.md new file mode 100644 index 0000000000000000000000000000000000000000..a19504c52078a134e361fa8e0496f0c67c98b745 --- /dev/null +++ b/content/sc.data/cellxgene_huPr_Pd_epi.md @@ -0,0 +1,15 @@ +--- +title: "Human Normal Prostate: Epithelial Cells" +description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)" +name: "Human Normal Prostate: Epithelial Cells" +date: 2019-12-24T21:46:39-06:00 +draft: false +weight: "2" +type: "custom" +layout: "cellxgene" +cellxgene: true +cxg_link: "https://cellxgene.cziscience.com/d/47d05a66-7b83-4439-ad18-180d4c262f7a.cxg/" +current: true +location: "" +--- + diff --git a/content/sc.data/cellxgene_huPr_Pd_fmst.md b/content/sc.data/cellxgene_huPr_Pd_fmst.md new file mode 100644 index 0000000000000000000000000000000000000000..fda48b338bfa7e7f4717db9523c1256a7c41d321 --- /dev/null +++ b/content/sc.data/cellxgene_huPr_Pd_fmst.md @@ -0,0 +1,15 @@ +--- +title: "Human Normal Prostate: Fibromuscular Cells" +description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)" +name: "Human Normal Prostate: Fibromuscular Cells" +date: 2019-12-24T21:46:39-06:00 +draft: false +weight: "2" +type: "custom" +layout: "cellxgene" +cellxgene: true +cxg_link: "https://cellxgene.cziscience.com/d/e0802089-01a0-4e3a-9dbf-03eac64b15d9.cxg/" +current: true +location: "" +--- + diff --git a/content/sc.data/cellxgene_muPrUr_epi.md b/content/sc.data/cellxgene_muPrUr_epi.md new file mode 100644 index 0000000000000000000000000000000000000000..ec2c1b58f2f832e2ede6546f11b6fbc79bef4e99 --- /dev/null +++ b/content/sc.data/cellxgene_muPrUr_epi.md @@ -0,0 +1,15 @@ +--- +title: "Mouse Prostate and Urethral: Epithelial Cells" +description: "As published in 2020 The Prostate (cellxgene)" +name: "Mouse Prostate and Urethral: Epithelial Cells" +date: 2019-12-24T21:46:39-06:00 +draft: false +weight: "5" +type: "custom" +layout: "cellxgene" +cellxgene: true +cxg_link: "https://cellxgene.cziscience.com/d/6a2facf2-ea03-407b-b73b-82d582da3930.cxg/" +current: true +location: "" +--- + diff --git a/content/sc.data/hu.Pd.deep.md b/content/sc.data/hu.Pd.deep.md index 1df059cab9e7d57f4b999239534d5121d7ade7ae..5f2fae489143945280ba2c7838b03a0f71131691 100644 --- a/content/sc.data/hu.Pd.deep.md +++ b/content/sc.data/hu.Pd.deep.md @@ -7,7 +7,10 @@ draft: false weight: "1" type: "custom" layout: "hu.Pd.deep" +cellxgene: false +cxg_link: "" current: true +location: "" aliases: /analysis.php --- diff --git a/content/sc.data/muPrUr.md b/content/sc.data/muPrUr.md index efd89387b6c15dd823a1fb6dbc87b87182eb0f1b..e1d9f8d42e575f21714857ad841471de1de00fbe 100644 --- a/content/sc.data/muPrUr.md +++ b/content/sc.data/muPrUr.md @@ -7,5 +7,8 @@ draft: false weight: "3" type: "custom" layout: "mu.PrUr" +cellxgene: false +cxg_link: "" current: true +location: "" --- diff --git a/layouts/custom/cellxgene.html b/layouts/custom/cellxgene.html index 9a151a26e4ae156e2d38d409ab94e963cf21dcdd..19923a51d9b885c0fe6c6023851cc79296da8bed 100644 --- a/layouts/custom/cellxgene.html +++ b/layouts/custom/cellxgene.html @@ -29,7 +29,7 @@ } </style> <div class="cellxgene"> - <iframe name="embed" src="https://cellxgene.strandlab.net/view/{{ .Params.location }}.h5ad/" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe> + <iframe name="embed" src="{{ .Params.cxg_link }}" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe> </div> <div class="no-cellxgene"> <h2>Screen width too narrow to display cellxgene</h1> diff --git a/layouts/custom/sc.data.html b/layouts/custom/sc.data.html index 1180e72d1e30a0d9d626d14fd4369bd0c9fce140..4b81ee7465b17f15b90b730a0c93b4f9460ca9fa 100644 --- a/layouts/custom/sc.data.html +++ b/layouts/custom/sc.data.html @@ -98,12 +98,19 @@ </div> <div class="content"> <hr> + <h2>Visualization with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2> + {{ range where .Pages.ByWeight "Params.cellxgene" true }} + <li><b><a href="{{ .Params.cxg_link }}" target="_blank">{{.Params.name}}</a></b></li> + {{ end }} <br> - {{ range where .Pages.ByWeight "Params.current" true }} + <hr> + <h2>Legacy Visualization</h2> + {{ range where .Pages.ByWeight "Params.cellxgene" false }} <li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li> {{ end }} <br> <hr> + <br> </div> <script>