From ab13ef8f3e76619dac5eec8eb8ff8348b6ff0981 Mon Sep 17 00:00:00 2001
From: Nicole Finks <nicole.finks@utsouthwestern.edu>
Date: Wed, 17 Jul 2019 12:32:01 -0500
Subject: [PATCH] [add csv and json files]
---
data/scRNAseq_huPr_D/updated_cleaned.csv | 292 +
.../scRNAseq_huPr_D/updated_cleaned_json.json | 10150 ++++++++++++++++
2 files changed, 10442 insertions(+)
create mode 100644 data/scRNAseq_huPr_D/updated_cleaned.csv
create mode 100644 data/scRNAseq_huPr_D/updated_cleaned_json.json
diff --git a/data/scRNAseq_huPr_D/updated_cleaned.csv b/data/scRNAseq_huPr_D/updated_cleaned.csv
new file mode 100644
index 0000000..a9533ca
--- /dev/null
+++ b/data/scRNAseq_huPr_D/updated_cleaned.csv
@@ -0,0 +1,292 @@
+PatientID,Study ID,Disease Status,BPH surgery,Age,Ethnicity,AUASS,Peak flowrate,Post void residual,Prostate volume,PSA,Urinary retention,5ARI,5ARI length (months),Alpha blocker,Alpha blocker length (months),BMI,Type 2 diabetes,Blood glucose,HBA1c,Hyperlipidemia,Hypertension,Serum,Urine,Buffy coat,Cryopreserved single cells,Flash frozen,Paraffin block,OCT block,Matching bladder,Matching Seminal vesicle,Matching vas deferens,Matching ureter
+bph00001,1,BPH,Simple,62,Cauc,21,6.1,157,100,9.62,1,0,NULL,1,60,29.1,1,286,7.2,1,1,0,0,0,0,1,1,1,0,0,0,0
+bph00002,2,BPH,Simple,65,Hisp,NULL,4.1,76,200,10.9,1,0,NULL,1,48,29.9,0,164,NULL,1,1,0,0,0,0,1,1,1,0,0,0,0
+bph00003,3,BPH,Simple,70,Cauc,8,4.1,170,208.9,2,0,0,NULL,1,NULL,32.7,0,NULL,NULL,1,1,0,0,0,0,1,1,1,0,0,0,0
+bph00004,4,BPH,TURP,61,Cauc,13,7.7,200,33,1,0,1,NULL,1,NULL,28.2,0,NULL,NULL,1,0,0,0,0,0,1,1,1,0,0,0,0
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+bph00098,175,BPH,TURP,59,Hisp,28,NULL,NULL,25,0.91,0,1,NULL,1,NULL,27,0,110,NULL,0,1,1,0,1,1,1,1,0,0,0,0,0
+bph00099,176,BPH,Simple,62,Cauc,12,8.6,700,109,29.06,0,0,NULL,1,6,29.9,0,104,NULL,1,1,0,0,1,1,1,1,1,0,0,0,0
+bph00100,177,BPH,Simple,73,Cauc,14,5.4,293,112,5.2,0,1,24,1,24,26.6,0,93,NULL,0,0,0,0,0,1,1,1,1,0,0,0,0
+bph00101,178,BPH,Simple,69,Cauc,NULL,NULL,NULL,120,13,1,0,NULL,1,3,27.4,0,96,NULL,0,0,0,0,0,1,1,1,1,0,0,0,0
+bph00102,179,BPH,Simple,83,Cauc,12,7,50,156,18.7,0,0,NULL,0,NULL,33.7,0,162,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00103,180,BPH,Simple,67,Cauc,19,3.8,118,93,6.7,0,0,NULL,0,NULL,27.9,0,94,NULL,1,0,1,0,1,1,1,1,1,0,0,0,0
+bph00104,181,BPH,Simple,70,Cauc,18,8.9,29,227,7.5,0,1,108,0,NULL,24.4,0,92,NULL,0,0,1,0,1,1,1,1,1,0,0,0,0
+bph00105,182,BPH,Simple,65,Hisp,7,15.5,282,200,10.2,0,0,NULL,0,NULL,26.6,1,190,9.5,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00106,183,BPH,TURP,78,Hisp,24,NULL,178,120,10.78,0,1,5,1,5,31.2,1,169,7.8,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00107,184,BPH,TURP,66,Hisp,NULL,2,NULL,32,1.06,0,1,3,1,3,30.7,0,NULL,NULL,0,1,1,1,1,1,1,1,1,0,0,0,0
+bph00108,185,BPH,Simple,57,Hisp,NULL,14,111,81,8.89,0,1,3,1,9,28.3,1,126,6,0,0,1,1,1,1,1,1,1,0,0,0,0
+bph00109,186,BPH,Simple,70,Cauc,NULL,0,300,99,NULL,1,1,2,1,2,24.3,0,99,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00110,187,BPH,Simple,72,Cauc,14,7.3,18,170,8.7,1,0,NULL,1,15,27.7,0,71,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00111,188,BPH,Simple,74,Cauc,31,6,220,200,3.4,0,0,NULL,1,9,30.2,0,97,NULL,1,0,1,0,1,1,1,1,1,0,0,0,0
+bph00112,189,BPH,TURP,66,AA,NULL,4,113,27,0.52,1,1,5,1,4,21.9,0,119,NULL,0,1,1,0,1,0,0,1,0,0,0,0,0
+bph00113,190,BPH,Simple,52,Hisp,NULL,NULL,NULL,96,5.49,1,1,12,1,12,23.9,0,114,NULL,1,1,1,1,1,1,1,1,1,0,0,0,0
+bph00114,191,BPH,TURP,73,Hisp,NULL,NULL,NULL,65,5.04,0,1,12,1,12,27.6,0,90,NULL,1,1,1,1,1,1,1,1,1,0,0,0,0
+bph00115,192,BPH,Simple,62,Cauc,17,25,NULL,120,6.7,1,0,NULL,0,NULL,31.4,0,100,NULL,0,1,1,0,1,1,1,1,1,0,0,0,0
+bph00116,193,BPH,Simple,75,Cauc,10,NULL,593,328,19.6,1,0,NULL,0,NULL,22.9,0,105,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00117,194,BPH,Simple,61,Cauc,9,6.7,264,150,NULL,0,0,NULL,0,NULL,30.6,1,130,NULL,0,1,1,0,1,1,1,1,1,0,0,0,0
+bph00118,195,BPH,Simple,64,Cauc,26,8.3,160,136,2.6,0,0,NULL,1,NULL,25.2,0,117,NULL,0,1,1,0,1,1,1,1,1,0,0,0,0
+bph00119,196,BPH,Simple,60,Cauc,21,2.1,NULL,138,7.5,0,0,NULL,0,NULL,25.1,0,312,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00120,197,BPH,Simple,47,Cauc,29,12.7,27,104,10,0,0,NULL,1,3,34.6,0,104,NULL,0,0,1,0,1,1,1,1,1,0,0,0,0
+bph00121,198,BPH,Simple,70,Hisp,17,12.5,181,132,4.6,1,1,2,1,2,29.8,0,160,NULL,0,1,1,0,1,1,1,1,1,0,0,0,0
+bph00122,199,BPH,Simple,78,Cauc,22,2.8,534,100,2,0,0,NULL,0,NULL,25.1,1,231,7,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00123,200,BPH,Simple,62,Cauc,NULL,NULL,88,130,11.24,1,0,NULL,1,4,27.8,0,99,NULL,0,0,1,0,0,1,1,1,1,0,0,0,0
+bph00124,203,BPH,Simple,72,Cauc,8,9.9,61,95,10.42,0,0,NULL,0,NULL,27.1,0,77,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00125,204,BPH,Simple,62,Cauc,22,NULL,NULL,140,12.21,0,0,NULL,0,NULL,33.7,0,137,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00126,205,BPH,Simple,70,Cauc,19,NULL,11,220,5.88,0,0,NULL,0,NULL,21.6,0,110,NULL,1,0,1,1,0,1,1,1,1,0,0,0,0
+bph00127,206,BPH,Simple,72,Cauc,23,8.6,404,120,2,0,1,6,1,3,35.2,0,123,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00128,207,BPH,Simple,64,Cauc,25,11.9,113,96,4.3,0,0,NULL,1,NULL,28.5,0,83,NULL,0,1,1,1,0,1,1,1,1,0,0,0,0
+bph00129,208,BPH,Simple,68,Cauc,21,9.3,25,102,6.5,0,0,NULL,0,NULL,33.8,0,122,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00130,209,BPH,Simple,90,Cauc,NULL,2.7,119,220,9.21,1,1,9,0,NULL,26.3,0,105,NULL,0,1,1,0,0,1,1,1,1,0,0,0,0
+bph00131,210,BPH,TURP,60,Hisp,NULL,NULL,50,51,2.7,0,1,3,1,3,30.9,0,94,NULL,1,1,1,0,0,0,0,0,0,0,0,0,0
+bph00132,211,BPH,Simple,70,AA,19,28.2,73,150,3.34,0,1,9,1,9,38.8,1,118,5.2,1,1,1,1,0,0,0,0,0,0,0,0,0
+bph00133,212,BPH,TURP,NULL,unknown,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,0,0,0,0,0,0,0,0,0,0
+bph00134,213,BPH,Simple,65,Cauc,9,16,9,100,1.68,0,0,NULL,0,NULL,24.4,1,178,NULL,0,1,0,0,0,1,1,1,1,0,0,0,0
+bph00135,214,BPH,Simple,63,Hisp,NULL,NULL,NULL,114,3.32,1,1,5,1,5,27.2,0,101,NULL,1,0,1,0,0,1,1,1,1,0,0,0,0
+bph00136,215,BPH,Simple,75,Cauc,11,21.6,111,103,4.3,0,0,NULL,0,NULL,22.2,0,101,NULL,1,1,1,0,0,1,1,1,1,0,0,0,0
+bph00137,216,BPH,Simple,51,AA,28,8.1,83,140,5.32,1,0,NULL,1,NULL,29.1,0,108,NULL,0,0,0,0,0,1,1,1,1,1,0,0,0
+bph00138,217,BPH,Simple,75,Cauc,20,5.2,95,120,5.38,0,0,NULL,0,NULL,32.3,0,124,NULL,0,0,1,0,0,1,1,1,1,1,0,0,0
+bph00139,218,BPH,Simple,82,Cauc,10,NULL,NULL,350,8.44,1,0,NULL,0,NULL,35,1,201,NULL,1,1,1,0,0,1,1,1,1,1,0,0,0
+bph00140,219,BPH,Simple,68,Cauc,12,11,94,120,20,0,1,NULL,1,NULL,27.1,1,196,NULL,0,1,1,1,0,1,1,1,1,0,0,0,0
+bph00141,221,BPH,TURP,62,Cauc,NULL,NULL,NULL,NULL,0.88,1,0,NULL,1,6,28.9,0,NULL,NULL,0,0,1,0,0,0,1,1,1,0,0,0,0
+bph00142,222,BPH,Simple,60,Cauc,14,6.1,89,134,6,0,1,6,1,NULL,23.7,1,182,NULL,1,0,1,0,0,1,1,1,1,1,0,0,0
+bph00143,223,BPH,Simple,70,Cauc,32,NULL,428,119,7.85,1,0,NULL,1,NULL,35.9,1,209,7.3,0,1,1,1,0,1,1,1,1,0,0,0,0
+bph00144,224,BPH,Simple,75,Cauc,14,4.6,111,157,13.7,0,0,NULL,1,12,31.3,0,123,NULL,1,1,1,1,0,0,1,1,1,0,0,0,0
+bph00145,225,BPH,Simple,73,Cauc,9,8,137,130,1.8,1,1,9,1,9,30.2,1,191,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00146,226,BPH,Simple,NULL,unknown,17,NULL,NULL,NULL,NULL,NULL,0,NULL,1,4,30,0,NULL,NULL,0,0,1,1,0,0,0,0,0,0,0,0,0
+bph00147,227,BPH,Simple,63,Hisp,NULL,NULL,NULL,113,6.7,1,0,NULL,1,12,26.8,1,192,6.3,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00148,228,BPH,Simple,70,Cauc,21,8,63,142,2.8,0,0,NULL,0,NULL,35.3,1,217,NULL,0,1,1,0,0,1,1,1,0,1,0,0,0
+bph00149,230,BPH,Simple,82,Cauc,25,12.5,58,124,NULL,0,1,NULL,0,NULL,24,1,207,NULL,1,1,1,1,0,1,1,1,1,1,0,0,0
+bph00150,231,BPH,Simple,65,unknown,35,5.9,871,110,8.11,1,0,NULL,0,NULL,24.2,0,99,NULL,0,0,1,0,0,1,0,1,1,1,0,0,0
+bph00151,232,BPH,Simple,71,Cauc,11,NULL,178,178,6.4,0,0,NULL,1,NULL,36.1,0,108,NULL,1,1,1,0,0,1,1,1,1,1,0,0,0
+bph00152,233,BPH,Simple,72,Hisp,29,7,35,105,4.27,1,1,6,1,6,22.1,0,103,NULL,1,0,1,0,0,1,1,1,1,0,0,0,0
+bph00153,234,BPH,Simple,58,Hisp,NULL,5.8,117,100,4.9,1,0,NULL,1,6,27.2,0,96,NULL,0,0,1,0,0,1,1,1,1,1,0,0,0
+bph00154,235,BPH,Simple,79,Cauc,19,1.9,138,105,1.9,0,1,84,1,84,27.1,0,114,NULL,1,1,1,1,0,1,0,1,1,0,0,0,0
+bph00155,237,BPH,Simple,67,AA,10,14.3,76,91,11,0,0,NULL,0,NULL,28.7,0,98,NULL,0,1,1,0,0,1,1,1,0,0,0,0,0
+bph00156,238,BPH,Simple,59,Cauc,NULL,NULL,NULL,127,6.17,0,0,NULL,1,3,35.9,1,158,6.2,1,1,1,0,0,1,1,1,0,0,0,0,0
+bph00157,239,BPH,Simple,78,Hisp,NULL,8.2,30,98,4.5,1,0,NULL,0,NULL,31.9,0,115,NULL,1,1,1,0,0,0,1,1,1,0,0,0,0
+bph00158,241,BPH,Simple,66,Cauc,27,3.8,30,90,3.5,0,1,7,1,2,35.4,0,105,NULL,1,0,1,0,0,1,1,1,1,0,0,0,0
+bph00159,242,BPH,Simple,74,Cauc,19,NULL,79,NULL,NULL,1,0,NULL,1,3,19,0,83,NULL,0,0,1,0,0,1,1,1,0,1,0,0,0
+bph00160,243,BPH,Simple,56,Hisp,NULL,NULL,746,190,6.67,1,1,12,1,14,35.1,1,211,7.9,1,1,1,0,0,1,1,1,1,0,0,0,0
+bph00161,244,BPH,Simple,76,Cauc,10,7.3,72,175,5.17,0,0,NULL,0,NULL,18.5,1,132,NULL,1,0,1,1,0,1,1,1,0,1,0,0,0
+bph00162,245,BPH,Simple,63,AA,NULL,NULL,NULL,123,2.7,1,1,12,1,3,33.5,0,NULL,NULL,0,0,1,0,0,1,1,1,0,0,0,0,0
+bph00163,246,BPH,Simple,61,Cauc,NULL,NULL,NULL,120,18.52,1,1,3,1,3,28.5,1,247,10.1,0,1,1,0,0,1,1,1,1,0,0,0,0
+bph00164,247,BPH,Simple,78,Hisp,NULL,NULL,NULL,117,NULL,1,1,3,1,3,23.9,0,162,NULL,0,1,0,0,0,1,1,1,0,0,0,0,0
+bph00165,249,BPH,Simple,60,Hisp,NULL,NULL,NULL,112,3.08,1,1,6,1,12,29.2,1,140,6.5,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00166,250,BPH,Simple,63,Cauc,NULL,NULL,NULL,119,4.9,1,0,NULL,1,NULL,29.5,0,99,NULL,0,0,1,0,0,1,1,1,1,1,0,0,0
+bph00167,251,BPH,Simple,64,Hisp,27,NULL,293,99,6.54,0,1,9,1,9,31.8,0,114,NULL,1,0,1,0,1,1,1,1,1,0,0,0,0
+bph00168,252,BPH,Simple,63,Cauc,17,11.5,380,104,NULL,0,0,NULL,0,NULL,33.3,1,131,NULL,1,0,1,1,0,0,0,1,1,1,0,0,0
+bph00169,254,BPH,Simple,60,Cauc,28,8.9,354,130,4.2,0,0,NULL,0,NULL,28.1,0,91,NULL,1,0,1,1,0,1,1,1,1,1,0,0,0
+bph00170,255,BPH,Simple,61,Hisp,10,9.3,120,96,8.47,1,1,NULL,1,NULL,34.8,0,166,NULL,0,0,1,0,0,1,1,1,1,0,0,0,0
+bph00171,256,BPH,Simple,69,Cauc,23,7,166,110,6.95,0,1,6,1,6,28.2,1,359,7.1,1,1,1,1,1,0,1,1,1,1,0,0,0
+bph00172,257,BPH,Simple,72,Cauc,NULL,10.8,54,112,1.7,1,0,NULL,1,36,39.6,1,219,NULL,1,1,1,0,0,1,1,1,1,1,0,0,0
+bph00173,258,BPH,Simple,65,Cauc,NULL,NULL,NULL,200,NULL,0,0,NULL,0,NULL,25.7,0,86,NULL,0,0,1,0,0,1,1,1,1,0,0,0,0
+bph00174,259,BPH,Simple,66,Cauc,19,NULL,555,132,19,0,0,NULL,0,NULL,23.7,0,106,NULL,0,0,1,0,0,1,1,1,1,0,0,0,0
+bph00175,260,BPH,Simple,61,Cauc,30,7.3,45,125,3.39,0,0,NULL,1,36,28.9,0,181,NULL,1,0,1,1,0,1,1,1,1,0,0,0,0
+bph00176,261,BPH,Simple,67,Cauc,12,7.4,120,209,12.76,0,0,NULL,0,NULL,32.3,0,123,NULL,1,1,1,1,0,1,1,1,1,0,0,0,0
+bph00177,262,BPH,Simple,67,Cauc,31,NULL,53,120,17.6,1,1,36,1,36,32.9,0,106,NULL,1,1,1,1,0,0,1,1,1,0,0,0,0
+bph00178,263,BPH,Simple,65,Cauc,21,NULL,NULL,116,10.8,1,1,6,1,6,23.7,0,110,NULL,0,0,1,0,0,0,1,1,1,1,0,0,0
+bph00179,265,BPH,Simple,66,Cauc,3,NULL,67,125,9.5,0,0,NULL,0,NULL,21.1,0,104,NULL,0,0,1,1,0,0,1,1,1,1,0,0,0
+bph00180,266,BPH,Simple,78,Cauc,14,12,526,134,9.27,0,0,NULL,1,2,26.9,0,103,NULL,0,0,1,0,0,1,1,1,1,1,0,0,0
+bph00181,267,BPH,Simple,76,Hisp,NULL,NULL,NULL,NULL,NULL,0,0,NULL,1,5,27.2,1,174,7.7,0,0,1,0,1,0,1,1,1,0,0,0,0
+bph00182,269,BPH,Simple,64,Cauc,9,6.8,12,100,5.21,0,0,NULL,0,NULL,35.4,0,106,NULL,0,0,1,1,0,0,1,1,0,0,0,0,0
+bph00183,270,BPH,Simple,71,Cauc,5,5.5,279,106,6.58,0,0,NULL,0,NULL,29.4,0,114,NULL,1,0,1,1,1,1,1,1,1,1,0,0,0
+bph00184,271,BPH,Simple,55,Hisp,NULL,5.7,119,85,3.44,1,1,3,1,24,38,1,144,6,1,1,1,0,1,0,1,1,1,0,0,0,0
+bph00185,272,BPH,Simple,68,Cauc,10,8.4,NULL,105,3.1,0,0,NULL,0,NULL,33.2,1,176,NULL,1,1,1,0,1,1,1,1,1,0,0,0,0
+bph00186,273,BPH,Simple,74,Hisp,NULL,9.7,31,170,NULL,0,0,NULL,1,3,31.9,0,111,NULL,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00187,274,BPH,Simple,75,Cauc,10,NULL,NULL,100,NULL,1,0,NULL,0,NULL,20.6,0,97,NULL,1,0,0,0,1,1,1,1,1,1,0,0,0
+bph00188,275,BPH,Simple,67,Asian,17,11.5,73,130,5.86,0,1,6,0,NULL,26.2,0,124,NULL,1,0,1,0,1,0,1,1,1,1,0,0,0
+bph00189,276,BPH,Simple,66,Cauc,16,5,121,102.3,5.87,0,0,NULL,1,NULL,27.1,0,99,NULL,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00190,277,BPH,Simple,75,Cauc,NULL,NULL,NULL,182,9.8,1,1,6,1,6,29.7,1,142,NULL,0,1,1,0,1,0,1,1,1,1,0,0,0
+bph00191,278,BPH,Simple,78,Cauc,26,NULL,173,198,NULL,1,0,NULL,1,2,25.1,0,102,NULL,0,1,1,0,1,1,1,1,1,1,0,0,0
+bph00192,279,BPH,Simple,81,Cauc,NULL,3.3,NULL,165,NULL,0,0,NULL,0,NULL,24.1,1,261,NULL,0,1,1,0,1,1,1,1,1,1,0,0,0
+bph00193,280,BPH,Simple,73,Cauc,16,NULL,NULL,120,1.9,1,1,12,0,NULL,30.1,0,165,NULL,1,0,1,0,1,1,1,1,1,1,0,0,0
+bph00194,281,BPH,Simple,64,Cauc,29,4.4,223,152,9.93,0,0,NULL,1,2,26.2,0,116,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00195,282,BPH,Simple,62,Cauc,21,8.2,501,149,2.54,0,1,12,1,12,25.1,0,108,NULL,1,0,1,0,1,0,1,1,1,1,0,0,0
+bph00196,283,BPH,Simple,81,Cauc,NULL,2,500,127,NULL,1,0,NULL,1,9,24.4,0,91,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00197,284,BPH,Simple,70,AA,NULL,NULL,NULL,120,3.62,1,1,12,1,12,29.6,1,194,6.5,0,1,1,0,1,1,1,1,1,0,0,0,0
+bph00198,285,BPH,Simple,73,Hisp,35,8.3,85,100,1.01,0,0,NULL,1,12,35.4,1,213,NULL,0,1,1,0,1,1,1,1,1,1,0,0,0
+bph00199,286,BPH,Simple,70,Cauc,24,9.9,70,95,NULL,0,0,NULL,1,3,27.3,0,93,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00200,287,BPH,Simple,82,Cauc,33,25,189,81,6.85,0,1,84,1,3,27.3,1,200,NULL,1,1,1,1,1,1,1,1,1,1,0,0,0
+bph00201,288,BPH,Simple,57,Cauc,NULL,NULL,NULL,99,NULL,0,0,NULL,0,NULL,30.6,0,118,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00202,289,BPH,Simple,61,Cauc,20,6.2,205,82,11.61,0,1,3,1,3,31.6,1,239,NULL,1,1,1,1,1,1,1,1,1,1,0,0,0
+bph00203,290,BPH,Simple,60,Cauc,10,9.8,177,236,12,0,0,NULL,0,NULL,29.4,0,88,NULL,0,0,1,1,1,1,1,1,1,1,0,0,0
+bph00204,291,BPH,Simple,55,Cauc,30,8.5,186,92,1.41,0,0,NULL,1,6,28.4,0,132,NULL,0,0,1,1,1,0,1,1,0,1,0,0,0
+bph00205,292,BPH,Simple,71,Cauc,18,14.1,112,120,7.53,1,0,NULL,0,NULL,22.5,0,87,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00206,293,BPH,Simple,70,Cauc,NULL,NULL,NULL,300,4.9,0,1,NULL,1,NULL,31,0,103,NULL,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00207,294,BPH,Simple,84,Cauc,7,4.7,61,140,6.73,0,0,NULL,0,NULL,26.8,1,124,6.1,0,1,1,0,1,1,1,1,1,1,0,0,0
+bph00208,295,BPH,Simple,76,AA,12,NULL,NULL,106,NULL,1,0,NULL,0,NULL,22.3,0,128,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00209,296,BPH,Simple,66,Cauc,22,9,150,177,13,0,0,NULL,0,NULL,26.9,0,92,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00210,297,BPH,Simple,74,Hisp,5,15.1,82,100,7.62,0,1,15,1,15,26.2,0,99,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00211,298,BPH,Simple,65,Cauc,15,9.5,NULL,148,4.1,0,1,12,0,NULL,28,0,94,NULL,0,1,1,0,1,1,1,1,1,1,0,0,0
+bph00212,299,BPH,Simple,68,AA,16,NULL,452,151,6.29,1,0,NULL,1,15,32.1,1,256,6.2,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00213,300,BPH,Simple,65,Cauc,NULL,5.8,82,NULL,2.61,0,0,NULL,0,NULL,25.1,0,103,NULL,0,0,1,0,1,1,1,1,1,1,0,0,0
+bph00214,301,BPH,Simple,62,Hisp,NULL,NULL,NULL,186,6.6,1,1,2,1,2,32.9,0,138,NULL,0,1,1,1,1,0,1,1,1,0,0,0,0
+bph00215,302,BPH,Simple,76,Cauc,6,5.8,NULL,150,2.16,0,1,60,0,NULL,25.1,0,84,NULL,1,0,1,0,1,0,1,1,1,1,0,0,0
+bph00216,303,BPH,Simple,53,Hisp,NULL,NULL,151,173,15.6,1,0,NULL,1,6,27.1,0,91,NULL,0,0,1,0,1,0,1,1,1,0,0,0,0
+bph00217,304,BPH,Simple,69,Hisp,16,NULL,93,100,5.28,0,0,NULL,1,12,29.1,0,108,NULL,0,1,0,0,0,0,1,1,1,0,0,0,0
+bph00218,305,BPH,Simple,75,Asian,10,8.6,54,100,7.16,0,0,NULL,0,NULL,23,0,98,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00219,306,BPH,Simple,81,Hisp,8,NULL,NULL,125,NULL,0,1,36,0,NULL,27.1,1,169,NULL,1,1,1,0,1,0,1,1,1,1,0,0,0
+bph00220,307,BPH,Simple,68,Cauc,14,4.1,365,84,4.5,0,0,NULL,1,6,28.5,0,99,NULL,1,0,1,0,1,0,1,1,1,1,0,0,0
+bph00221,308,BPH,Simple,70,Cauc,23,NULL,NULL,115,6.77,0,0,NULL,1,NULL,27.8,1,142,7,1,1,1,0,1,0,1,1,1,1,0,0,0
+bph00222,309,BPH,Simple,71,Cauc,13,11,188,107,8.2,0,1,60,1,60,24,0,89,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00223,310,BPH,Simple,62,Cauc,5,10.8,96,131,6.9,0,0,NULL,0,NULL,25.5,0,140,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00224,311,BPH,Simple,79,Cauc,NULL,NULL,NULL,100,3,1,1,30,1,30,30.3,0,111,NULL,0,0,0,0,0,0,0,0,0,0,0,0,0
+bph00225,312,BPH,Simple,70,Cauc,NULL,10.1,151,130,1.62,1,1,15,1,20,36,0,115,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00226,313,BPH,Simple,79,Cauc,NULL,NULL,NULL,110,NULL,0,1,6,1,6,31.4,1,212,7,1,1,1,0,1,0,1,1,1,1,0,0,0
+bph00227,314,BPH,Simple,76,Cauc,7,10.2,68,143,10.49,0,0,NULL,0,NULL,25.1,0,146,NULL,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00228,315,BPH,Simple,68,Hisp,NULL,NULL,NULL,300,4.51,0,1,6,1,6,29.1,1,209,8.9,1,1,1,0,1,0,1,1,1,0,0,0,0
+bph00229,316,BPH,Simple,37,AA,NULL,NULL,701,140,0.8,1,0,NULL,1,NULL,29.1,0,116,NULL,1,1,1,0,1,1,1,1,1,1,0,0,0
+bph00230,317,BPH,Simple,68,Cauc,24,7,137,95,21.03,0,1,24,1,24,24.3166324831,0,123,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00231,318,BPH,Simple,59,AA,NULL,NULL,NULL,98,7.21,1,1,3,1,3,21.9939045465,0,95,NULL,0,0,1,0,1,0,1,1,1,0,0,0,0
+bph00232,319,BPH,Simple,82,Cauc,NULL,NULL,NULL,100,NULL,1,0,NULL,1,3,30.3434423835,1,93,NULL,1,1,0,0,1,0,1,1,1,1,0,0,0
+bph00233,320,BPH,Simple,64,Cauc,20,NULL,307,144,9.8,0,0,NULL,1,48,26.8667204001,0,103,NULL,1,0,0,0,0,0,1,1,1,1,0,0,0
+bph00234,321,BPH,Simple,73,Cauc,22,NULL,NULL,130,NULL,1,1,3,0,NULL,45.2122054443,1,264,NULL,1,1,0,0,1,0,1,1,1,1,0,0,0
+bph00235,322,BPH,Simple,71,Hisp,NULL,NULL,NULL,114,6,1,1,9,1,9,28.3415792025,0,131,NULL,1,1,1,1,1,0,1,1,1,0,0,0,0
+bph00236,324,BPH,Simple,70,AA,35,3.3,67,119,5.39,0,0,NULL,1,NULL,25.6184830928,1,148,NULL,1,1,1,0,1,0,1,1,1,0,0,0,0
+bph00237,325,BPH,Simple,76,Cauc,23,NULL,150,300,7.8,0,0,NULL,0,NULL,21.5023398791,0,119,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00238,326,BPH,Simple,68,Cauc,14,11,74,185,4.91,0,1,6,1,6,29.7034081242,0,111,NULL,0,0,1,0,1,0,1,1,1,1,0,0,0
+bph00239,327,BPH,Simple,74,Cauc,NULL,NULL,NULL,144,21,1,0,NULL,0,NULL,26.6289210018,0,118,NULL,1,1,1,0,1,1,1,1,0,0,0,0,0
+bph00240,328,BPH,Simple,69,Hisp,24,3.8,32,165,8.6,1,0,NULL,0,NULL,31.7278602178,1,126,NULL,1,1,1,0,1,0,1,1,1,1,0,0,0
+bph00241,329,BPH,Simple,68,Cauc,16,12.6,79,115,5.9,0,0,NULL,1,NULL,25.8122965226,0,123,NULL,1,0,0,0,1,0,1,1,1,1,0,0,0
+bph00242,330,BPH,Simple,78,Cauc,NULL,4.3,213,130,NULL,1,1,NULL,1,NULL,24.3888637392,1,183,NULL,0,1,1,0,1,0,1,1,1,0,0,0,0
+bph00243,331,BPH,Simple,59,AA,NULL,NULL,NULL,104,2.77,1,1,4,1,2,23.6901356293,0,NULL,NULL,0,1,1,0,1,1,1,1,0,0,0,0,0
+bph00244,332,BPH,Simple,71,Cauc,13,15.6,239,140,7.81,0,0,NULL,1,4,29.5579457926,1,128,NULL,1,1,1,0,1,0,1,1,1,1,0,0,0
+bph00245,333,BPH,Simple,61,Cauc,30,NULL,NULL,90,1.38,0,0,NULL,0,NULL,23.7394525263,0,118,NULL,0,0,1,0,1,0,0,0,0,1,0,0,0
+bph00246,334,BPH,Simple,70,Hisp,NULL,NULL,NULL,120,5.6,1,0,NULL,1,5,26.5398489981,1,177,NULL,0,1,1,0,1,0,1,1,1,1,0,0,0
+bph00247,335,BPH,Simple,72,Cauc,19,17.9,159,153,3.3,1,1,3,1,3,43.1441275693,1,155,NULL,1,1,0,0,0,0,1,1,1,1,0,0,0
+bph00248,336,BPH,Simple,66,AA,NULL,NULL,29,200,9.17,1,1,12,1,12,27.1131437167,0,87,NULL,0,1,0,0,0,0,1,1,1,1,0,0,0
+bph00249,337,BPH,Simple,68,Cauc,23,9.8,35,113,NULL,0,1,NULL,1,NULL,44.8745838362,0,118,NULL,1,1,0,0,0,0,1,1,1,1,0,0,0
+bph00250,338,BPH,Simple,69,Cauc,21,5.7,171,160,3.24,1,0,NULL,0,NULL,48.8493787239,1,169,NULL,1,1,0,0,0,0,1,1,1,1,0,0,0
+bph00251,D2,Donor,NULL,24,NULL,NULL,NULL,NULL,17,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00252,D3,Donor,NULL,19,NULL,NULL,NULL,NULL,18,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00253,D4,Donor,NULL,24,NULL,NULL,NULL,NULL,15,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00254,D5,Donor,NULL,21,NULL,NULL,NULL,NULL,17,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00255,D6,Donor,NULL,47,NULL,NULL,NULL,NULL,30,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00256,D7,Donor,NULL,18,NULL,NULL,NULL,NULL,16,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00257,D8,Donor,NULL,18,NULL,NULL,NULL,NULL,18,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,0,0,1,1,1,1,1,1,1
+bph00258,D9,Donor,NULL,19,NULL,NULL,NULL,NULL,17,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,1,1,0,1,1,1,1,1,1,1
+bph00259,D10,Donor,NULL,29,NULL,NULL,NULL,NULL,19,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00260,D11,Donor,NULL,40,NULL,NULL,NULL,NULL,30,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00261,D12,Donor,NULL,28,NULL,NULL,NULL,NULL,22,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00262,D13,Donor,NULL,37,NULL,NULL,NULL,NULL,30,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00263,D14,Donor,NULL,22,NULL,NULL,NULL,NULL,16,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00264,D15,Donor,NULL,43,NULL,NULL,NULL,NULL,27,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00265,D16,Donor,NULL,25,NULL,NULL,NULL,NULL,16,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00266,D17,Donor,NULL,31,NULL,NULL,NULL,NULL,23,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00267,D18,Donor,NULL,25,AA,NULL,NULL,NULL,26,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00268,D19,Donor,NULL,51,Hisp,NULL,NULL,NULL,75,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00269,D20,Donor,NULL,18,NULL,NULL,NULL,NULL,20,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00270,D21,Donor,NULL,59,NULL,NULL,NULL,NULL,30,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00271,D22,Donor,NULL,38,NULL,NULL,NULL,NULL,30,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,0,1,0,1,1,1,1,1,1,1
+bph00272,D23,Donor,NULL,NULL,NULL,NULL,NULL,NULL,28,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00273,D24,Donor,NULL,48,NULL,NULL,NULL,NULL,24,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00274,D25,Donor,NULL,32,NULL,NULL,NULL,NULL,16,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00275,D26,Donor,NULL,29,NULL,NULL,NULL,NULL,19,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00276,D27,Donor,NULL,25,NULL,NULL,NULL,NULL,15,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00277,D28,Donor,NULL,22,NULL,NULL,NULL,NULL,14,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,1,1,0,1,1,1,1,1,1,1
+bph00278,D29,Donor,NULL,42,NULL,NULL,NULL,NULL,18,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,1,0,0,1,1,1,1,1,1,1
+bph00279,D31,Donor,NULL,27,NULL,NULL,NULL,NULL,20,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00280,D32,Donor,NULL,23,NULL,NULL,NULL,NULL,18,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00281,D33,Donor,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00282,D34,Donor,NULL,NULL,NULL,NULL,NULL,NULL,19,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00283,D35,Donor,NULL,29,NULL,NULL,NULL,NULL,20,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00284,D36,Donor,NULL,NULL,NULL,NULL,NULL,NULL,21,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00285,D37,Donor,NULL,29,NULL,NULL,NULL,NULL,24,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00286,D38,Donor,NULL,25,NULL,NULL,NULL,NULL,21,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,0,0,0,1,1,1,1,1,1,1
+bph00287,D39,Donor,NULL,32,NULL,NULL,NULL,NULL,20,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00288,D40,Donor,NULL,40,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+bph00289,D41,Donor,NULL,50,NULL,NULL,NULL,NULL,34,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,1,1,1,0,1,1,1,1,1,1,1
+bph00290,D42,Donor,NULL,40,NULL,NULL,NULL,NULL,27,NULL,NULL,NULL,NULL,0,NULL,NULL,0,NULL,NULL,0,0,0,0,0,0,1,1,1,1,1,1,1
+
diff --git a/data/scRNAseq_huPr_D/updated_cleaned_json.json b/data/scRNAseq_huPr_D/updated_cleaned_json.json
new file mode 100644
index 0000000..9af72d1
--- /dev/null
+++ b/data/scRNAseq_huPr_D/updated_cleaned_json.json
@@ -0,0 +1,10150 @@
+tientID": "bph00001",
+ "Study ID": 1,
+ "Disease Status": "BPH",
+ "BPH surgery": "Simple",
+ "Age": 62,
+ "Ethnicity": "Cauc",
+ "AUASS": 21,
+ "Peak flowrate": 6.1,
+ "Post void residual": 157,
+ "Prostate volume": 100,
+ "PSA": 9.62,
+ "Urinary retention": 1,
+ "5ARI": 0,
+ "5ARI length (months)": null,
+ "Alpha blocker": 1,
+ "Alpha blocker length (months)": 60,
+ "BMI": 29.1,
+ "Type 2 diabetes": 1,
+ "Blood glucose": 286,
+ "HBA1c": 7.2,
+ "Hyperlipidemia": 1,
+ "Hypertension": 1,
+ "Serum": 0,
+ "Urine": 0,
+ "Buffy coat": 0,
+ "Cryopreserved single cells": 0,
+ "Flash frozen": 1,
+ "Paraffin block": 1,
+ "OCT block": 1,
+ "Matching bladder": 0,
+ "Matching Seminal vesicle": 0,
+ "Matching vas deferens": 0,
+ "Matching ureter": 0
+ },
+ {
+ "PatientID": "bph00002",
+ "Study ID": 2,
+ "Disease Status": "BPH",
+ "BPH surgery": "Simple",
+ "Age": 65,
+ "Ethnicity": "Hisp",
+ "AUASS": null,
+ "Peak flowrate": 4.1,
+ "Post void residual": 76,
+ "Prostate volume": 200,
+ "PSA": 10.9,
+ "Urinary retention": 1,
+ "5ARI": 0,
+ "5ARI length (months)": null,
+ "Alpha blocker": 1,
+ "Alpha blocker length (months)": 48,
+ "BMI": 29.9,
+ "Type 2 diabetes": 0,
+ "Blood glucose": 164,
+ "HBA1c": null,
+ "Hyperlipidemia": 1,
+ "Hypertension": 1,
+ "Serum": 0,
+ "Urine": 0,
+ "Buffy coat": 0,
+ "Cryopreserved single cells": 0,
+ "Flash frozen": 1,
+ "Paraffin block": 1,
+ "OCT block": 1,
+ "Matching bladder": 0,
+ "Matching Seminal vesicle": 0,
+ "Matching vas deferens": 0,
+ "Matching ureter": 0
+ },
+ {
+ "PatientID": "bph00003",
+ "Study ID": 3,
+ "Disease Status": "BPH",
+ "BPH surgery": "Simple",
+ "Age": 70,
+ "Ethnicity": "Cauc",
+ "AUASS": 8,
+ "Peak flowrate": 4.1,
+ "Post void residual": 170,
+ "Prostate volume": 208.9,
+ "PSA": 2,
+ "Urinary retention": 0,
+ "5ARI": 0,
+ "5ARI length (months)": null,
+ "Alpha blocker": 1,
+ "Alpha blocker length (months)": null,
+ "BMI": 32.7,
+ "Type 2 diabetes": 0,
+ "Blood glucose": null,
+ "HBA1c": null,
+ "Hyperlipidemia": 1,
+ "Hypertension": 1,
+ "Serum": 0,
+ "Urine": 0,
+ "Buffy coat": 0,
+ "Cryopreserved single cells": 0,
+ "Flash frozen": 1,
+ "Paraffin block": 1,
+ "OCT block": 1,
+ "Matching bladder": 0,
+ "Matching Seminal vesicle": 0,
+ "Matching vas deferens": 0,
+ "Matching ureter": 0
+ },
+ {
+ "PatientID": "bph00004",
+ "Study ID": 4,
+ "Disease Status": "BPH",
+ "BPH surgery": "TURP",
+ "Age": 61,
+ "Ethnicity": "Cauc",
+ "AUASS": 13,
+ "Peak flowrate": 7.7,
+ "Post void residual": 200,
+ "Prostate volume": 33,
+ "PSA": 1,
+ "Urinary retention": 0,
+ "5ARI": 1,
+ "5ARI length (months)": null,
+ "Alpha blocker": 1,
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+ }
+]
--
GitLab