From 6c5a14153fa3a3fd6fa84f71d96a7f1a0c29e2ce Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 23 Apr 2021 22:39:19 -0500
Subject: [PATCH] Prepare 2021 submission data with self cellxgene server

---
 archetypes/sc.data.md                         |     1 +
 content/sc.data/PdPgb.md                      |     1 +
 ... cellxgene_2018CellReports_huPr_Pd_all.md} |     5 +-
 ... cellxgene_2018CellReports_huPr_Pd_epi.md} |     7 +-
 ...cellxgene_2018CellReports_huPr_Pd_fmst.md} |     7 +-
 ... cellxgene_2020Prostate_huPr_PdPgb_epi.md} |     5 +-
 ...d => cellxgene_2020Prostate_muPrUr_epi.md} |     4 +-
 .../sc.data/cellxgene_2021_huPr_PdPb_all.md   |    16 +
 .../sc.data/cellxgene_2021_huPr_PdPb_epi.md   |    16 +
 .../sc.data/cellxgene_2021_huPr_PdPb_fmst.md  |    16 +
 .../sc.data/cellxgene_2021_huPr_PdPb_leu.md   |    16 +
 content/sc.data/cellxgene_2021_muPrUr_all.md  |    16 +
 content/sc.data/cellxgene_2021_muPrUr_epi.md  |    16 +
 content/sc.data/cellxgene_2021_muPrUr_fmst.md |    16 +
 content/sc.data/hu.Pd.deep.md                 |     1 +
 content/sc.data/muPrUr.md                     |     1 +
 content/sc.data/repository/filters.json       |    66 +
 content/sc.data/repository/repository.json    | 16802 ++++++++++++++++
 content/sc.data/repository/thumbnails.json    |  3410 ++++
 layouts/custom/sc.data.html                   |    10 +-
 20 files changed, 20418 insertions(+), 14 deletions(-)
 rename content/sc.data/{cellxgene_huPr_Pd_all.md => cellxgene_2018CellReports_huPr_Pd_all.md} (80%)
 rename content/sc.data/{cellxgene_huPr_Pd_epi.md => cellxgene_2018CellReports_huPr_Pd_epi.md} (67%)
 rename content/sc.data/{cellxgene_huPr_Pd_fmst.md => cellxgene_2018CellReports_huPr_Pd_fmst.md} (65%)
 rename content/sc.data/{cellxgene_huPr_PdPgb_epi.md => cellxgene_2020Prostate_huPr_PdPgb_epi.md} (77%)
 rename content/sc.data/{cellxgene_muPrUr_epi.md => cellxgene_2020Prostate_muPrUr_epi.md} (80%)
 create mode 100644 content/sc.data/cellxgene_2021_huPr_PdPb_all.md
 create mode 100644 content/sc.data/cellxgene_2021_huPr_PdPb_epi.md
 create mode 100644 content/sc.data/cellxgene_2021_huPr_PdPb_fmst.md
 create mode 100644 content/sc.data/cellxgene_2021_huPr_PdPb_leu.md
 create mode 100644 content/sc.data/cellxgene_2021_muPrUr_all.md
 create mode 100644 content/sc.data/cellxgene_2021_muPrUr_epi.md
 create mode 100644 content/sc.data/cellxgene_2021_muPrUr_fmst.md
 create mode 100644 content/sc.data/repository/filters.json
 create mode 100644 content/sc.data/repository/repository.json
 create mode 100644 content/sc.data/repository/thumbnails.json

diff --git a/archetypes/sc.data.md b/archetypes/sc.data.md
index d3f009c..362c86c 100644
--- a/archetypes/sc.data.md
+++ b/archetypes/sc.data.md
@@ -7,6 +7,7 @@ draft: true
 weight: ""
 type: "custom"
 layout: ""
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true
diff --git a/content/sc.data/PdPgb.md b/content/sc.data/PdPgb.md
index 91faaa1..726cdfc 100644
--- a/content/sc.data/PdPgb.md
+++ b/content/sc.data/PdPgb.md
@@ -7,6 +7,7 @@ draft: false
 weight: "2"
 type: "custom"
 layout: "hu.PdPgb"
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true
diff --git a/content/sc.data/cellxgene_huPr_Pd_all.md b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_all.md
similarity index 80%
rename from content/sc.data/cellxgene_huPr_Pd_all.md
rename to content/sc.data/cellxgene_2018CellReports_huPr_Pd_all.md
index 164132b..067b269 100644
--- a/content/sc.data/cellxgene_huPr_Pd_all.md
+++ b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_all.md
@@ -1,12 +1,13 @@
 ---
 title: "Human Normal Prostate: All Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: All Cells"
+name: "2018 Cell Reports: Human Normal Prostate - All Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "1"
+weight: "10"
 type: "custom"
 layout: "cellxgene"
+pending: false
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/dd811609-3d83-4bdb-801f-d6c6c93d1a9e.cxg/"
 current: true
diff --git a/content/sc.data/cellxgene_huPr_Pd_epi.md b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_epi.md
similarity index 67%
rename from content/sc.data/cellxgene_huPr_Pd_epi.md
rename to content/sc.data/cellxgene_2018CellReports_huPr_Pd_epi.md
index a19504c..0f1a1e9 100644
--- a/content/sc.data/cellxgene_huPr_Pd_epi.md
+++ b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_epi.md
@@ -1,12 +1,13 @@
 ---
-title: "Human Normal Prostate: Epithelial Cells"
+title: "2018 Human Normal Prostate: Epithelial Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: Epithelial Cells"
+name: "2018 Cell Reports: Human Normal Prostate - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "2"
+weight: "11"
 type: "custom"
 layout: "cellxgene"
+pending: false
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/47d05a66-7b83-4439-ad18-180d4c262f7a.cxg/"
 current: true
diff --git a/content/sc.data/cellxgene_huPr_Pd_fmst.md b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_fmst.md
similarity index 65%
rename from content/sc.data/cellxgene_huPr_Pd_fmst.md
rename to content/sc.data/cellxgene_2018CellReports_huPr_Pd_fmst.md
index fda48b3..258ead7 100644
--- a/content/sc.data/cellxgene_huPr_Pd_fmst.md
+++ b/content/sc.data/cellxgene_2018CellReports_huPr_Pd_fmst.md
@@ -1,11 +1,12 @@
 ---
-title: "Human Normal Prostate: Fibromuscular Cells"
+title: "Human Normal Prostate: Fibromuscular Stromal Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: Fibromuscular Cells"
+name: "2018 Cell Reports: Human Normal Prostate - Fibromuscular Stromal Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "2"
+weight: "12"
 type: "custom"
+pending: false
 layout: "cellxgene"
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/e0802089-01a0-4e3a-9dbf-03eac64b15d9.cxg/"
diff --git a/content/sc.data/cellxgene_huPr_PdPgb_epi.md b/content/sc.data/cellxgene_2020Prostate_huPr_PdPgb_epi.md
similarity index 77%
rename from content/sc.data/cellxgene_huPr_PdPgb_epi.md
rename to content/sc.data/cellxgene_2020Prostate_huPr_PdPgb_epi.md
index 4da2cb7..623074a 100644
--- a/content/sc.data/cellxgene_huPr_PdPgb_epi.md
+++ b/content/sc.data/cellxgene_2020Prostate_huPr_PdPgb_epi.md
@@ -1,11 +1,12 @@
 ---
 title: "Human Normal and BPH Prostate: Epithelial Cells"
 description: "As published in 2020 Prostate (cellxgene)"
-name: "Human Normal and BPH Prostate: Epithelial Cells"
+name: "2020 Prostate: Human Normal and BPH Prostate - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "4"
+weight: "8"
 type: "custom"
+pending: false
 layout: "cellxgene"
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/599b5549-3611-41e1-884f-d5c16b2efd31.cxg/"
diff --git a/content/sc.data/cellxgene_muPrUr_epi.md b/content/sc.data/cellxgene_2020Prostate_muPrUr_epi.md
similarity index 80%
rename from content/sc.data/cellxgene_muPrUr_epi.md
rename to content/sc.data/cellxgene_2020Prostate_muPrUr_epi.md
index ec2c1b5..5497f45 100644
--- a/content/sc.data/cellxgene_muPrUr_epi.md
+++ b/content/sc.data/cellxgene_2020Prostate_muPrUr_epi.md
@@ -1,10 +1,10 @@
 ---
 title: "Mouse Prostate and Urethral: Epithelial Cells"
 description: "As published in 2020 The Prostate (cellxgene)"
-name: "Mouse Prostate and Urethral: Epithelial Cells"
+name: "2020 Prostate: Mouse Prostate and Urethral - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "5"
+weight: "9"
 type: "custom"
 layout: "cellxgene"
 cellxgene: true
diff --git a/content/sc.data/cellxgene_2021_huPr_PdPb_all.md b/content/sc.data/cellxgene_2021_huPr_PdPb_all.md
new file mode 100644
index 0000000..2e3da9e
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_huPr_PdPb_all.md
@@ -0,0 +1,16 @@
+---
+title: "Human Normal and BPH Prostate: All Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - All Cells "
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "1"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_all.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_huPr_PdPb_epi.md b/content/sc.data/cellxgene_2021_huPr_PdPb_epi.md
new file mode 100644
index 0000000..b5684c0
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_huPr_PdPb_epi.md
@@ -0,0 +1,16 @@
+---
+title: "Human Normal and BPH Prostate: Epithelial Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Epithelial Cells "
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "2"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_epi.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_huPr_PdPb_fmst.md b/content/sc.data/cellxgene_2021_huPr_PdPb_fmst.md
new file mode 100644
index 0000000..4882966
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_huPr_PdPb_fmst.md
@@ -0,0 +1,16 @@
+---
+title: "Human Normal and BPH Prostate: Fibromuscular Stromal Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Fibromuscular Stromal Cells "
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "3"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_fmst.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_huPr_PdPb_leu.md b/content/sc.data/cellxgene_2021_huPr_PdPb_leu.md
new file mode 100644
index 0000000..76a9177
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_huPr_PdPb_leu.md
@@ -0,0 +1,16 @@
+---
+title: "Human Normal and BPH Prostate: Leukocyte Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Leukocyte Cells "
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "4"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_leu.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_muPrUr_all.md b/content/sc.data/cellxgene_2021_muPrUr_all.md
new file mode 100644
index 0000000..d7edcac
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_muPrUr_all.md
@@ -0,0 +1,16 @@
+---
+title: "Mouse Prostate and Urethral: All Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - All Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "5"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_all.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_muPrUr_epi.md b/content/sc.data/cellxgene_2021_muPrUr_epi.md
new file mode 100644
index 0000000..ff30314
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_muPrUr_epi.md
@@ -0,0 +1,16 @@
+---
+title: "Mouse Prostate and Urethral: Epithelial Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - Epithelial Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: true
+weight: "5"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_epi.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/cellxgene_2021_muPrUr_fmst.md b/content/sc.data/cellxgene_2021_muPrUr_fmst.md
new file mode 100644
index 0000000..e2c7349
--- /dev/null
+++ b/content/sc.data/cellxgene_2021_muPrUr_fmst.md
@@ -0,0 +1,16 @@
+---
+title: "Mouse Prostate and Urethral: Fibromuscular Stromal Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - Fibromuscular Stromal Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "5"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_fmst.h5ad/"
+current: true
+location: ""
+---
+
diff --git a/content/sc.data/hu.Pd.deep.md b/content/sc.data/hu.Pd.deep.md
index 5f2fae4..901310d 100644
--- a/content/sc.data/hu.Pd.deep.md
+++ b/content/sc.data/hu.Pd.deep.md
@@ -7,6 +7,7 @@ draft: false
 weight: "1"
 type: "custom"
 layout: "hu.Pd.deep"
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true
diff --git a/content/sc.data/muPrUr.md b/content/sc.data/muPrUr.md
index e1d9f8d..b5ec4d1 100644
--- a/content/sc.data/muPrUr.md
+++ b/content/sc.data/muPrUr.md
@@ -7,6 +7,7 @@ draft: false
 weight: "3"
 type: "custom"
 layout: "mu.PrUr"
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true
diff --git a/content/sc.data/repository/filters.json b/content/sc.data/repository/filters.json
new file mode 100644
index 0000000..e948f09
--- /dev/null
+++ b/content/sc.data/repository/filters.json
@@ -0,0 +1,66 @@
+[
+    {"id": "disease", "parent": "#", "text": "Disease Phenotype",  "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "disease.d", "parent":"disease", "text": "Donor (normal)"},
+    {"id": "disease.b", "parent":"disease", "text": "BPH"},
+    {"id": "disease.c", "parent":"disease", "text": "Prostate Cancer"},
+    {"id": "demographics", "parent": "#", "text": "Demographics",  "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "ethnicity", "parent":"demographics", "text": "Ethnicity", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "ethn.aa", "parent":"ethnicity", "text": "African American"},
+    {"id": "ethn.as", "parent":"ethnicity", "text": "Asian"},
+    {"id": "ethn.ca", "parent":"ethnicity", "text": "Caucasian"},
+    {"id": "ethn.hi", "parent":"ethnicity", "text": "Hispanic"},
+    {"id": "ethn.uk", "parent":"ethnicity", "text": "Unknown Ethnicity"},
+    {"id": "age", "parent":"demographics", "text": "Age", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "age.40", "parent":"age", "text": "<40yo"},
+    {"id": "age.50", "parent":"age", "text": "41-50yo"},
+    {"id": "age.60", "parent":"age", "text": "51-60yo"},
+    {"id": "age.70", "parent":"age", "text": "61-70yo"},
+    {"id": "age.80", "parent":"age", "text": "71-80yo"},
+    {"id": "age.90", "parent":"age", "text": "81-90yo"},
+    {"id": "age.100", "parent":"age", "text": "91+yo"},
+    {"id": "age.uk", "parent":"age", "text": "Unknown Age"},
+    {"id": "clinical", "parent":"#", "text": "Clinical Features", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "bmi", "parent":"clinical", "text": "BMI", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "bmi.uw", "parent":"bmi", "text": "Underweight"},
+    {"id": "bmi.nw", "parent":"bmi", "text": "Normal"},
+    {"id": "bmi.ow", "parent":"bmi", "text": "Overweight"},
+    {"id": "bmi.ob", "parent":"bmi", "text": "Obese"},
+    {"id": "bmi.vo", "parent":"bmi", "text": "Very Obese"},
+    {"id": "bmi.so", "parent":"bmi", "text": "Severely Obese"},
+    {"id": "bmi.uk", "parent":"bmi", "text": "Unknown BMI"},
+    {"id": "t2d", "parent":"clinical", "text": "Type 2 Diabetes", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "t2d.y", "parent":"t2d", "text": "Yes"},
+    {"id": "t2d.n", "parent":"t2d", "text": "No"},
+    {"id": "t2d.uk", "parent":"t2d", "text": "Unknown"},
+    {"id": "bph", "parent":"clinical", "text": "BPH Features", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "bphsurgery", "parent":"bph", "text": "BPH Surgery", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "bphsurg.simp", "parent":"bphsurgery", "text": "Simple Prostatectomy"},
+    {"id": "bphsurg.turp", "parent":"bphsurgery", "text": "TURP"},
+    {"id": "bphsurg.uk", "parent":"bphsurgery", "text": "Unknown Surgery"},
+    {"id": "5ari", "parent":"bph", "text": "5ARI", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "5ari.y", "parent":"5ari", "text": "Yes 5ARI"},
+    {"id": "5ari.n", "parent":"5ari", "text": "No 5ARI"},
+    {"id": "5ari.uk", "parent":"5ari", "text": "Unknown 5ARI"},
+    {"id": "5aril", "parent":"bph", "text": "5ARI Length (months)", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "5aril.10", "parent":"5aril", "text": "<10mnths 5ARI"},
+    {"id": "5aril.20", "parent":"5aril", "text": "10-20mnths 5ARI"},
+    {"id": "5aril.30", "parent":"5aril", "text": "20+mnths 5ARI"},
+    {"id": "5aril.uk", "parent":"5aril", "text": "Unknown 5ARI"},
+    {"id": "5aril.na", "parent":"5aril", "text": "NA 5ARI"},
+    {"id": "prostatevol", "parent":"clinical", "text": "Prostate Volume", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "prvol.low", "parent":"prostatevol", "text": "Low Volumne"},
+    {"id": "prvol.med", "parent":"prostatevol", "text": "Medium Volume"},
+    {"id": "prvol.hi", "parent":"prostatevol", "text": "High Volume"},
+    {"id": "prvol.vhi", "parent":"prostatevol", "text": "Very High Volume"},
+    {"id": "prvol.uk", "parent":"prostatevol", "text": "Unknown Volume"},
+    {"id": "repo", "parent":"#", "text": "Repository", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "repo.pr", "parent":"repo", "text": "Prostate", "a_attr": { "class": "no_checkbox" }, "disabled": true},
+    {"id": "repo.pr.cry", "parent":"repo.pr", "text": "Pr Cryopreserved Cells"},
+    {"id": "repo.pr.ff", "parent":"repo.pr", "text": "Pr Flash Frozen Tissue"},
+    {"id": "repo.pr.ffpe", "parent":"repo.pr", "text": "Pr FFPE"},
+    {"id": "repo.pr.oct", "parent":"repo.pr", "text": "Pr OCT"},
+    {"id": "repo.bl", "parent":"repo", "text": "Bladder"},
+    {"id": "repo.sv", "parent":"repo", "text": "Seminal Vesicle"},
+    {"id": "repo.vd", "parent":"repo", "text": "Vas Deference"},
+    {"id": "repo.ut", "parent":"repo", "text": "Ureter"}
+]
\ No newline at end of file
diff --git a/content/sc.data/repository/repository.json b/content/sc.data/repository/repository.json
new file mode 100644
index 0000000..8d3cb03
--- /dev/null
+++ b/content/sc.data/repository/repository.json
@@ -0,0 +1,16802 @@
+[
+ {
+  "PatientID": "dws0000001",
+  "Study ID": "1",
+  "Disease Status": "BPH",
+  "BPH surgery": "Simple",
+  "Age": "62",
+  "Ethnicity": "Cauc",
+  "AUASS": "21",
+  "Peak flowrate": "6.1",
+  "Post void residual": "157",
+  "Prostate volume": "100",
+  "PSA": "9.62",
+  "Urinary retention": "1",
+  "5ARI": "0",
+  "5ARI length (months)": "unknown",
+  "Alpha blocker": "1",
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+ },
+ {
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+ {
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+ {
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+ {
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+ {
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+ {
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+ {
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+ {
+  "PatientID": "dws0000039",
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+ {
+  "PatientID": "dws0000040",
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Ethnicity": "unknown",
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+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
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+  "Peak flowrate": "unknown",
+  "Post void residual": "unknown",
+  "Prostate volume": "unknown",
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+  "Urinary retention": "unknown",
+  "5ARI": "unknown",
+  "5ARI length (months)": "unknown",
+  "Alpha blocker": "unknown",
+  "Alpha blocker length (months)": "unknown",
+  "BMI": "unknown",
+  "Type 2 diabetes": "unknown",
+  "Blood glucose": "unknown",
+  "HBA1c": "unknown",
+  "Hyperlipidemia": "unknown",
+  "Hypertension": "unknown",
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+  "Urine": "0",
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+  "Flash frozen": "0",
+  "Paraffin block": "0",
+  "OCT block": "0",
+  "Matching bladder": "0",
+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
+  "PatientID": "dws0000479",
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+  "Disease Status": "Donor",
+  "BPH surgery": "na",
+  "Age": "53",
+  "Ethnicity": "unknown",
+  "AUASS": "unknown",
+  "Peak flowrate": "unknown",
+  "Post void residual": "unknown",
+  "Prostate volume": "unknown",
+  "PSA": "unknown",
+  "Urinary retention": "unknown",
+  "5ARI": "unknown",
+  "5ARI length (months)": "unknown",
+  "Alpha blocker": "unknown",
+  "Alpha blocker length (months)": "unknown",
+  "BMI": "unknown",
+  "Type 2 diabetes": "unknown",
+  "Blood glucose": "unknown",
+  "HBA1c": "unknown",
+  "Hyperlipidemia": "unknown",
+  "Hypertension": "unknown",
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+  "Urine": "0",
+  "Buffy coat": "0",
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+  "Paraffin block": "0",
+  "OCT block": "0",
+  "Matching bladder": "0",
+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ },
+ {
+  "PatientID": "dws0000480",
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+  "Disease Status": "Donor",
+  "BPH surgery": "na",
+  "Age": "unknown",
+  "Ethnicity": "unknown",
+  "AUASS": "unknown",
+  "Peak flowrate": "unknown",
+  "Post void residual": "unknown",
+  "Prostate volume": "unknown",
+  "PSA": "unknown",
+  "Urinary retention": "unknown",
+  "5ARI": "unknown",
+  "5ARI length (months)": "unknown",
+  "Alpha blocker": "unknown",
+  "Alpha blocker length (months)": "unknown",
+  "BMI": "unknown",
+  "Type 2 diabetes": "unknown",
+  "Blood glucose": "unknown",
+  "HBA1c": "unknown",
+  "Hyperlipidemia": "unknown",
+  "Hypertension": "unknown",
+  "Serum": "0",
+  "Urine": "0",
+  "Buffy coat": "0",
+  "Cryopreserved single cells": "0",
+  "Flash frozen": "0",
+  "Paraffin block": "0",
+  "OCT block": "0",
+  "Matching bladder": "0",
+  "Matching Seminal vesicle": "0",
+  "Matching vas deferens": "0",
+  "Matching ureter": "0"
+ }
+]
\ No newline at end of file
diff --git a/content/sc.data/repository/thumbnails.json b/content/sc.data/repository/thumbnails.json
new file mode 100644
index 0000000..3b97ba8
--- /dev/null
+++ b/content/sc.data/repository/thumbnails.json
@@ -0,0 +1,3410 @@
+[
+ {
+   "patient": "BPH001",
+   "Pr": "BPH001.0.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "BPH002",
+   "Pr": "BPH002.0.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
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+ },
+ {
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+   "Bl": "",
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+ },
+ {
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+ {
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+   "Bl": "",
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+ },
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+   "LUT": ""
+ },
+ {
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+   "LUT": ""
+ },
+ {
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+ },
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+ },
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+ {
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+ {
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+ },
+ {
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+ },
+ {
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+   "Pr": "D045.0.Pr.-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D045",
+   "Pr": "D045.0.Pr.-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D046",
+   "Pr": "D046.BaseS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D046",
+   "Pr": "D046.BaseS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D046",
+   "Pr": "D046.BaseS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D047",
+   "Pr": "D047.0.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D049",
+   "Pr": "D049.S1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
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+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D049",
+   "Pr": "D049.S1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D049",
+   "Pr": "D049.S1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D053",
+   "Pr": "D053.MidS2.Pr-13.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D053",
+   "Pr": "D053.MidS2.Pr-13.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D054",
+   "Pr": "D054.BaseS1.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D054",
+   "Pr": "D054.BaseS1.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D055",
+   "Pr": "D055.MidS2.Pr-0.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D055",
+   "Pr": "D055.MidS2.Pr-0.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D056",
+   "Pr": "D056.BaseS1.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D056",
+   "Pr": "D056.BaseS1.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D056",
+   "Pr": "D056.BaseS1.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D060",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D060.Cor.LUT-7.jpg"
+ },
+ {
+   "patient": "D061",
+   "Pr": "D061.Sag.Pr-4.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D062",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D062.Cor1.LUT-8.jpg"
+ },
+ {
+   "patient": "D063",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D063.Sag2.LUT-4.jpg"
+ },
+ {
+   "patient": "D063",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D063.Sag2.LUT-4.jpg"
+ },
+ {
+   "patient": "D066",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D066.Sag1.LUT-5.jpg"
+ },
+ {
+   "patient": "D066",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D066.Sag1.LUT-5.jpg"
+ },
+ {
+   "patient": "D067",
+   "Pr": "D067.CorAntS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D067",
+   "Pr": "D067.CorAntS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D067",
+   "Pr": "D067.CorAntS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D067",
+   "Pr": "D067.CorAntS1.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D070",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D070.Sag1.LUT-6.jpg"
+ },
+ {
+   "patient": "D070",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D070.Sag1.LUT-6.jpg"
+ },
+ {
+   "patient": "D075",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D075.Sag.LUT-5.jpg"
+ },
+ {
+   "patient": "D076",
+   "Pr": "D076.Sag1.Pr-2.jpg",
+   "Bl": "",
+   "LUT": "D076.Sag2.LUT-5.jpg"
+ },
+ {
+   "patient": "D076",
+   "Pr": "D076.Sag1.Pr-2.jpg",
+   "Bl": "",
+   "LUT": "D076.Sag2.LUT-5.jpg"
+ },
+ {
+   "patient": "D077",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D077.Sag.LUT-1.jpg"
+ },
+ {
+   "patient": "D077",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D077.Sag.LUT-1.jpg"
+ },
+ {
+   "patient": "D079",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D079.Sag1.LUT-4.jpg"
+ },
+ {
+   "patient": "D079",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D079.Sag1.LUT-4.jpg"
+ },
+ {
+   "patient": "D080",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D080.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D080",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D080.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D081",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D081.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D081",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D081.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D083",
+   "Pr": "D083.BaseS1.Pr-5.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D083",
+   "Pr": "D083.BaseS1.Pr-5.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D083",
+   "Pr": "D083.BaseS1.Pr-5.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D084",
+   "Pr": "D084.ApexS2.Pr-1.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D086",
+   "Pr": "D086.Apex.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D086",
+   "Pr": "D086.Apex.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D086",
+   "Pr": "D086.Apex.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D086",
+   "Pr": "D086.Apex.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D088",
+   "Pr": "D088.ApexS4.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D088",
+   "Pr": "D088.ApexS4.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D088",
+   "Pr": "D088.ApexS4.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D088",
+   "Pr": "D088.ApexS4.Pr-2.jpg",
+   "Bl": "",
+   "LUT": ""
+ },
+ {
+   "patient": "D089",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D089.Sag1.LUT-3.jpg"
+ },
+ {
+   "patient": "D089",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D089.Sag1.LUT-3.jpg"
+ },
+ {
+   "patient": "D090",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D090.Sag1.LUT-2.jpg"
+ },
+ {
+   "patient": "D090",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D090.Sag1.LUT-2.jpg"
+ },
+ {
+   "patient": "D091",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D091.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D091",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D091.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D092",
+   "Pr": "",
+   "Bl": "D092.Sag4.Bl-1.jpg",
+   "LUT": "D092.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D092",
+   "Pr": "",
+   "Bl": "D092.Sag4.Bl-1.jpg",
+   "LUT": "D092.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D092",
+   "Pr": "",
+   "Bl": "D092.Sag4.Bl-1.jpg",
+   "LUT": "D092.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D092",
+   "Pr": "",
+   "Bl": "D092.Sag4.Bl-1.jpg",
+   "LUT": "D092.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D093",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D093.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D093",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D093.Sag1.LUT-1.jpg"
+ },
+ {
+   "patient": "D096",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D096.Sag2.LUT-1.jpg"
+ },
+ {
+   "patient": "D096",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D096.Sag2.LUT-1.jpg"
+ },
+ {
+   "patient": "D096",
+   "Pr": "",
+   "Bl": "",
+   "LUT": "D096.Sag2.LUT-1.jpg"
+ }
+]
\ No newline at end of file
diff --git a/layouts/custom/sc.data.html b/layouts/custom/sc.data.html
index 819e86f..a8564cf 100644
--- a/layouts/custom/sc.data.html
+++ b/layouts/custom/sc.data.html
@@ -102,12 +102,18 @@
 </div>
 <div class="content">
     <hr>
-    <h2>Visualization with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2>
-    {{ range where .Pages.ByWeight "Params.cellxgene" true }}
+    <h2>Visualization of Published Data with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2>
+    {{ range where (where .Pages.ByWeight "Params.cellxgene" true) "Params.pending" false}}
     <li><b><a href="{{ .Params.cxg_link }}" target="_blank">{{.Params.name}}</a></b></li>
     {{ end }}
     <br>
     <hr>
+    <h2><i>Visualization of Unpublished Data with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></i></h2>
+    {{ range where (where .Pages.ByWeight "Params.cellxgene" true) "Params.pending" true}}
+    <li><b><a href="{{.Permalink}}"><mark>{{.Params.name}}</mark></a></b></li>
+    {{ end }}
+    <br>
+    <hr>
     <h2>Legacy Visualization</h2>
     {{ range where .Pages.ByWeight "Params.cellxgene" false }}
     <li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li>
-- 
GitLab