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PIRL
MSOT_Analysis_Pipeline
Commits
dbbca437
Commit
dbbca437
authored
Dec 02, 2020
by
Devin OKelly
Browse files
Switch to double quotes in astrocyte_pkg unmixing endmembers.
parent
9f5aa456
Changes
1
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Inline
Side-by-side
astrocyte_pkg.yml
View file @
dbbca437
...
...
@@ -221,16 +221,16 @@ workflow_parameters:
description
:
|
Selection of spectral unmixing endmembers.
# default: ['hbo2', 'hb', 'water', 'fat']
default
:
'
hbo2
'
default
:
"
hbo2
"
choices
:
-
[
'
hbo2
'
,
'
HbO2
-
Oxyhemoglobin
'
]
-
[
'
hb
'
,
'
Hb
-
Deoxyhemoglobin
'
]
-
[
'
water
'
,
'
H2O
-
Water
'
]
-
[
'
fat
'
,
'
Adipose
Fat
'
]
#- [
'
icg
'
,
'
ICG - Indocyanine Green
'
]
-
[
'
carbazole_violet
'
,
'
Carbazole
Violet
'
]
-
[
'
phthalo_green
'
,
'
Phthalo
Green
'
]
-
[
'
user
'
,
'
User-provided
spectra
'
]
-
[
"
hbo2
"
,
"
HbO2
-
Oxyhemoglobin
"
]
-
[
"
hb
"
,
"
Hb
-
Deoxyhemoglobin
"
]
-
[
"
water
"
,
"
H2O
-
Water
"
]
-
[
"
fat
"
,
"
Adipose
Fat
"
]
#- [
"
icg
"
,
"
ICG - Indocyanine Green
"
]
-
[
"
carbazole_violet
"
,
"
Carbazole
Violet
"
]
-
[
"
phthalo_green
"
,
"
Phthalo
Green
"
]
-
[
"
user
"
,
"
User-provided
spectra
"
]
## TODO: More thorough testing of this
-
id
:
spectraFiles
...
...
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