diff --git a/Change_Log.txt b/Change_Log.txt
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-#########################################################################
-Change Log:
-#v1.7.4, 03/17/2021: MetaboAnalyst's ORA and QEA analyses were added. ORA analysis is done when interested features are supplied. QEA analysis is done following differential feature tests. A bug causing missing control vs. treatment result sheets was fixed. Value filter was fixed at 0. Group mean lower bound and log offset default values were revised. Data imputation was done after normalization and before log2 transformation. If imputation method was mean, median, or half minimum, log offset was disabled. Scaling option for heatmap, PCA, and correlation plots was added.
-#v1.7.3, 08/04/2020: R 4.0.2 was tested. Data template was changed to .xlsx. Macro was no longer needed. Library path was changed to ~/R/4.0.2-gccmkl for BioHPC. PCA labels and ellipses were added. Heatmap colors were added.
-#v1.7.2, 03/26/2020: A bug regarding empty feature IDs was fixed.
-#v1.7.1, 12/04/2019: Figures were saved as both .ps and .png files. Euler plot was disabled for >6 samples. Samples / features can be clustered or not on the heatmaps.
-#v1.7.0, 10/22/2019: Figures were saved as .ps files in a Figure folder. Correlation plot was genrated with the old method for better speed. Euler plot was disabled for >10 samples. Y axis of volcano plot could be raw or adjusted p-values. DESeq was renamed RLE as I would implement the DESeq differential expression analysis in the future. RLE is the same method used by DESeq but I slightly modified it to allow for zeros, missing values and / or values below the value filter. Due to this reason I couldn't use the DESeq normalization directly.
-#v1.6.9, 10/4/2019: A bug regarding cpglm was fixed. The bug caused an error in cpglm fitting but the class(fit) was still 'cpglm' and fit$converged was still TRUE. Visualization option was added. Version number checkup was added for the data template. Multiple other minor improvements.
-#v1.6.8, 09/19/2019: A bug regarding featureDescription was fixed. The bug was present only when data format was "table with feature description" and samples were excluded which happened to cause some features #v1.6.7, 08/29/2019: Correlation plot was enchanced. Euler diagram was added. Software version number was reported in the result file.
-#v1.6.6, 08/28/2019: Data table with feature description column was enabled, minor bugs fixed, and volcano plot colors customized.
-#v1.6.5, 08/27/2019: A bug regarding number of features per sample when data imputation = "NA" was fixed.
-#v1.6.4, 08/08/2019: A bug regarding groupMeanLowerBound was fixed. Definition and default value of groupCountFilter were modified. Data imputation was implemented. Missing values were allowed.
-#v1.6.3, 08/05/2019: a bug regarding nSamples and formula string generation (only when technical replicates are present) was fixed.
-#v1.6.2, 07/24/2019: a bug regarding normalization size factors was fixed. The bug caused size factors to be applied to incorrect samples. If you have used versions before this fix, please rerun your analysis using this fixed version.
-#v1.6.1, 07/03/2019: a bug regarding numerical batch IDs was fixed.
-#v1.6, 06/24/2019: Multiple normalization methods; visualization plots; sample exclusion; feature exclusion; cpglm and glm for statistical tests;
-#v1.5, 03/13/2019: If logTransform enabled, data=log2(data+logOffset) before statistical tests; p-values are FDR-adjusted; Bugs fixed; normalization enabled;
-#v1.4, 01/18/2019: Added functionality. (1) Averaging technical replicates. (2) Auto-IDs.
-#v1.1-1.3: Bugs fixed.
-#v1.0: Basic analysis including counting features and t-tests.
-#########################################################################
-
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similarity index 100%
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diff --git a/V2.0c/ODA/MetaboAnalyst_3.0.3/sweave_report_mummichog.R b/V2.1/ODA/MetaboAnalyst_3.0.3/sweave_report_mummichog.R
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diff --git a/V2.0c/ODA/MetaboAnalyst_3.0.3/sweave_report_network.R b/V2.1/ODA/MetaboAnalyst_3.0.3/sweave_report_network.R
similarity index 100%
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diff --git a/V2.0c/ODA/MetaboAnalyst_3.0.3/sweave_report_power.R b/V2.1/ODA/MetaboAnalyst_3.0.3/sweave_report_power.R
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diff --git a/V2.0c/ODA/MetaboAnalyst_3.0.3/sweave_report_stats.R b/V2.1/ODA/MetaboAnalyst_3.0.3/sweave_report_stats.R
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diff --git a/V2.0d_test/ODA/ODA.R b/V2.1/ODA/ODA.R
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diff --git a/V2.0d_test/ODA/libraries.R b/V2.1/ODA/libraries.R
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diff --git a/V2.0c_Standalone_07282023/ODA/workBook.R b/V2.1/ODA/workBook.R
old mode 100755
new mode 100644
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diff --git a/V2.0c/data_template_V2.0c.xlsx b/V2.1/data_template_V2.1.xlsx
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diff --git a/V2.0d_test/run_analysis.sh b/V2.1/oda.sh
similarity index 70%
rename from V2.0d_test/run_analysis.sh
rename to V2.1/oda.sh
index 2f41953d9cef7a143aac55936248d156012a90b0..9e75d5d81e6e86d1766d32eab5abefb52d6dd959 100755
--- a/V2.0d_test/run_analysis.sh
+++ b/V2.1/oda.sh
@@ -13,16 +13,13 @@ then
 	echo "########## ODA Tool Usage ##########"
 	exit
 fi
-#module load R/4.0.2-gccmkl	#Comment this line out (adding a # at the beginning) if running from your own computer.
-module load singularity/3.9.9
-ODA_MODULE=/archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif
-DIR=`dirname $0`
+ODA_DIR=`dirname $0`
 INPUT_FILE=$1
 OUTPUT_FOLDER=$2
 QUEUE=$3
 if [ "$QUEUE" == "" ]
 then
-	QUEUE=256GB
+	QUEUE=local
 fi
 
 if [ -d "$OUTPUT_FOLDER" ]
@@ -40,7 +37,7 @@ fi
 mkdir -p $OUTPUT_FOLDER
 if [ "$QUEUE" == "local" ]
 then
-	singularity exec $ODA_MODULE Rscript $DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log
-#else
-#	srun -p $QUEUE Rscript $DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log
+	sh $ODA_DIR/run_analysis.sh $ODA_DIR $INPUT_FILE $OUTPUT_FOLDER
+else
+	sbatch -p $QUEUE $ODA_DIR/run_analysis.sh $ODA_DIR $INPUT_FILE $OUTPUT_FOLDER
 fi
diff --git a/V2.1/run_analysis.sh b/V2.1/run_analysis.sh
new file mode 100644
index 0000000000000000000000000000000000000000..dae341fc84028478c4da82781eb3292edf70d35e
--- /dev/null
+++ b/V2.1/run_analysis.sh
@@ -0,0 +1,9 @@
+#!/bin/bash
+#module load R/4.0.2-gccmkl	#Comment this line out (adding a # at the beginning) if running from your own computer.
+module load singularity/3.9.9
+ODA_MODULE=/archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif
+ODA_DIR=$1
+INPUT_FILE=$2
+OUTPUT_FOLDER=$3
+singularity exec $ODA_MODULE Rscript $ODA_DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log
+
diff --git a/V2.1/test_data.xlsx b/V2.1/test_data.xlsx
new file mode 100755
index 0000000000000000000000000000000000000000..f7249afe76056d725b3672477294d59175b5017d
Binary files /dev/null and b/V2.1/test_data.xlsx differ
diff --git a/V2.0d_test/FileExamples/Customized_DB_for_Enrichment_or_Pathway_Analysis/customized_DB_example_HMDB.csv b/archived/V2.0c/FileExamples/Customized_DB_for_Enrichment_or_Pathway_Analysis/customized_DB_example_HMDB.csv
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