From 18384f9f716d99106c5403e989a6f52963c31d37 Mon Sep 17 00:00:00 2001 From: Zhiyu <zhiyu.zhao@utsouthwestern.edu> Date: Thu, 18 Mar 2021 23:48:25 -0500 Subject: [PATCH] V1.7.4 --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 75efd34..8ab7be2 100755 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ This is an R program to visualize and analyze -omics data such as those from mic ## Current version: 1.7.4. Tested R versions: 4.0.2, 3.5.1. -**Highlighted changes:** Metabolite Set Enrichment Analysis (MSEA) is implemented using MetaboAnalystR 3.0.3. If a list of feature IDs is supplied, the Over Representation Analysis (ORA) can be done. If a differential test is specified, the Quantitative Enrichment Analysis (QEA) can be done. To do the analysis, features need to be either HMDB or KEGG IDs, or a mixture of them. Alternatively, features can be metabolite names available in the MetaboAnalyst's compound database. See [ID Mappings](CRI_HMDB_KEGG_IDs.xlsx) for acceptable IDs and names. See [MetaboAnalyst](https://www.metaboanalyst.ca/MetaboAnalyst/resources/data/5_Enrichment%20Analysis.pdf) for more details about MSEA. +**Highlighted changes:** Metabolite Set Enrichment Analysis (MSEA) is implemented using MetaboAnalystR 3.0.3. If a list of feature IDs is supplied, the Over Representation Analysis (ORA) can be done. If a differential test is specified, the Quantitative Enrichment Analysis (QEA) can be done. To do the analysis, features need to be either HMDB or KEGG IDs, or a mixture of them. Alternatively, features can be metabolite names available in the MetaboAnalyst's compound database. See [ID Mappings](CRI_HMDB_KEGG_IDs.xlsx) for acceptable IDs and names and an ID conversion tool. See [MetaboAnalyst](https://www.metaboanalyst.ca/MetaboAnalyst/resources/data/5_Enrichment%20Analysis.pdf) for more details about MSEA. ## How to run this tool: -- GitLab