upload_data.sh 3.15 KB
Newer Older
Venkat Malladi's avatar
Venkat Malladi committed
1
2
3
4
5
6
7
8
eu_register.py  --no-aliases -m 'localhost:8000' -p patient -i update_database/json/patients.json
eu_register.py  --no-aliases -m 'localhost:8000' -p patient -i update_database/json/patients_deprecated.json
eu_register.py  --no-aliases -m 'localhost:8000' -p germline -i update_database/json/germline.json
eu_register.py  --no-aliases -m 'localhost:8000' -p radiation -i update_database/json/radiation.json
eu_register.py  --no-aliases -m 'localhost:8000' -p radiation -i update_database/json/radiation_brain_missing.json
eu_register.py  --no-aliases -m 'localhost:8000' -p supportive_medication -i update_database/json/supportive_medication.json
eu_register.py  --no-aliases -m 'localhost:8000' -p medication -i update_database/json/medication.json
eu_register.py  --no-aliases -m 'localhost:8000' -p medical_imaging -i update_database/json/medical_imaging.json
Venkat Malladi's avatar
Venkat Malladi committed
9
eu_register.py  --no-aliases -m 'localhost:8000' -p consent -i update_database/json/consent.json (# consent issue)
Venkat Malladi's avatar
Venkat Malladi committed
10
11
12


eu_register.py  --no-aliases -m 'localhost:8000' -p surgery -i update_database/json/surgery.json
Venkat Malladi's avatar
Venkat Malladi committed
13
14
15
16
17
18
19
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery -i update_database/json/surgery_copath_only.json
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery -i update_database/json/surgery_no_copath.json
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery -i update_database/json/surgery_mets.json
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery -i update_database/json/surgery_biopsy.json



Venkat Malladi's avatar
Venkat Malladi committed
20
21
22
23
24
25
26
27
28
29
30
31
32
33
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_ablation.json
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_nephrectomy.json
eu_register.py  --no-aliases -m 'localhost:8000' -p pathology_report -i update_database/json/pathology_nephrectomy.json

eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_ablation_missing.json
eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_nephrectomy_missing.json
eu_register.py  --no-aliases -m 'localhost:8000' -p pathology_report -i update_database/json/pathology_nephrectomy_missing.json

eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_procedure_mets.json
eu_register.py  --no-aliases -m 'localhost:8000' -p pathology_report -i update_database/json/pathology_metasis.json

eu_register.py  --no-aliases -m 'localhost:8000' -p surgery_procedure -i update_database/json/surgery_procedure_biopsy.json
eu_register.py  --no-aliases -m 'localhost:8000' -p pathology_report -i update_database/json/pathology_biopsy.json

Venkat Malladi's avatar
Venkat Malladi committed
34
eu_register.py  --no-aliases -m 'localhost:8000' -p pathology_report -i update_database/json/pathology_nephrectomy_new.json
Venkat Malladi's avatar
Venkat Malladi committed
35

Venkat Malladi's avatar
Venkat Malladi committed
36
37
38
eu_register.py  --no-aliases -m 'localhost:8000' -p vital_results -i update_database/json/vitals.json
eu_register.py  --no-aliases -m 'localhost:8000' -p lab_results -i update_database/json/labs.json
eu_register.py  --no-aliases -m 'localhost:8000' -p biospecimens -i update_database/json/biospecimen.json
Venkat Malladi's avatar
Venkat Malladi committed
39
40


Venkat Malladi's avatar
Venkat Malladi committed
41
eu_register.py  --no-aliases -m 'localhost:8000' -p ihc -i json/ihc.json