From 9de569c69fa8836bca140347397a54f3a87cc8fa Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 8 Apr 2019 23:39:27 -0500
Subject: [PATCH] Fix copy process output
---
workflow/main.nf | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index d352fb2..2ed4074 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -8,7 +8,7 @@ params.run = "TRUE"
process copy {
- publishDir "$baseDir/output", mode: 'copy'
+ publishDir "$baseDir/../", mode: 'copy'
input:
@@ -16,8 +16,8 @@ process copy {
output:
- file("**/Clinical/**") into outPathClinical
- file("**/Expression/**") into outPathExpression
+ file("Clinical/**") into outPathClinical
+ file("Expression/**") into outPathExpression
script:
--
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