diff --git a/workflow/main.nf b/workflow/main.nf index 1fe01633f780b3173cd6acc67146968e98148c0a..189372ada114e64d67efb48c63e9f7bef8e2c39e 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -8,7 +8,7 @@ params.run = "TRUE" process copy { - publishDir "$baseDir/output/", mode: 'copy' + publishDir "$baseDir/output/", mode: 'symlink' input: @@ -22,6 +22,6 @@ process copy { script: """ - cp -r /project/shared/bicf_workflow_ref/tcga_shiny_app_data/* . + ln -s /project/shared/bicf_workflow_ref/tcga_shiny_app_data/* . """ }