sra_pipeline issueshttps://git.biohpc.swmed.edu/BICF/Astrocyte/sra_pipeline/-/issues2020-08-26T11:06:35-05:00https://git.biohpc.swmed.edu/BICF/Astrocyte/sra_pipeline/-/issues/27Add flag for SAM instead of FastQ2020-08-26T11:06:35-05:00Jonathan GesellAdd flag for SAM instead of FastQCreate an option if users want to download the SAM file instead of the FastQ files.Create an option if users want to download the SAM file instead of the FastQ files.Jonathan GesellJonathan Gesellhttps://git.biohpc.swmed.edu/BICF/Astrocyte/sra_pipeline/-/issues/13nullDataError2020-04-20T10:55:45-05:00Jonathan GesellnullDataErrorNeeds to throw an error when srapath returns null, example:
SRS070511Needs to throw an error when srapath returns null, example:
SRS070511Jonathan GesellJonathan Gesellhttps://git.biohpc.swmed.edu/BICF/Astrocyte/sra_pipeline/-/issues/10File vs Channel2020-08-27T10:18:28-05:00Jeremy MathewsFile vs ChannelCurrently scripts as passed in by channels. try using simple file() command.Currently scripts as passed in by channels. try using simple file() command.Jeremy MathewsJeremy Mathews