From fcb2d95696c05b31bc280efe0ac3735c24ae9ea8 Mon Sep 17 00:00:00 2001
From: Peng Lian <Peng.Lian@UTSouthwestern.edu>
Date: Thu, 3 Mar 2022 00:00:08 -0600
Subject: [PATCH] Escape slash for groove
---
workflow/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 5ceaf89..c6a508d 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -49,7 +49,7 @@ process checkdesignfile {
stdout spltnames
script:
"""
- # convert dos \r to unix format
+ # convert dos \\r to unix format
sed -i 's/\\x0D\$//' design.ori.txt
bash $repoDir/process_scripts/design_file/checkdesignfile.sh ${params.pairs} design.ori.txt
"""
--
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