diff --git a/vizapp/load_libs.R b/vizapp/load_libs.R index ad44b422bc0e6ccd0c8f44923ceebd262db21c0f..268ae9deefcd9beeb65d7c07aa36f344c1cc6a33 100644 --- a/vizapp/load_libs.R +++ b/vizapp/load_libs.R @@ -3,6 +3,7 @@ update.packages() install.packages("sqldf",dep=TRUE) install.packages("gmp",dep=TRUE) +install.packages("shinythemes",dep=TRUE) install.packages(c('gplots','lattice','latticeExtra','vegan','labdsv','cluster','ggplot2')) install.packages("Vennerable", repos="http://R-Forge.R-project.org",type='source') source("http://bioconductor.org/biocLite.R") diff --git a/vizapp/server.R b/vizapp/server.R index fa9060562c272d26a5fdcd23763b3f40497c22cc..e0a38d7ef951740183ced1b0773680dbaf02f5ac 100644 --- a/vizapp/server.R +++ b/vizapp/server.R @@ -11,7 +11,6 @@ library("gplots") shinyServer(function(input, output, session) { data.dir <- Sys.getenv('outputDir') - #data.dir <-"workflow_322_output" rda.dir <- data.dir symsyn <- read.table(file='symbol2synonym.txt',header=FALSE) names(symsyn) <- c('symbol','synonyms')