diff --git a/vizapp/.Rhistory b/vizapp/.Rhistory index 6cff52acb8c5be24b4258496775fe4d7234efb87..4cd1023840f366bee676779b5b5608c41e6b8fc5 100644 --- a/vizapp/.Rhistory +++ b/vizapp/.Rhistory @@ -1,19 +1,3 @@ -div(class="card-footer", -a(class="btn btn-primary btn-sm", 'data-toggle'="tab",'data-value'="DEA",id="dea","DEA") -) -) -), -column(4, -div(class="card text-center", -div(class="card-header", -"GSEA" -), -div(class="card-body", -h5(class="card-title","To Examine Gene Set Enrichment Analysis"), -p(class="card-text","Here you will be able explore Gene Set Enrichment Analysis by Group and Gene Set List.") -), -div(class="card-footer", -a(class="btn btn-primary btn-sm",'data-toggle'="tab", 'data-value'="QuSAGE",id="gsea","GSEA") ) ) ) @@ -508,5 +492,21 @@ runApp('shiny_R/vizapp') runApp('shiny_R/vizapp') install.packages("shinythemes") install.packages("shinythemes", dep=TRUE) +shiny::runApp('shiny_R/DisHet_shinyapp') +runApp('shiny_R/DisHet_shinyapp') +install.packages("DisHet") +runApp('shiny_R/DisHet_shinyapp') +runApp('shiny_R/DisHet_shinyapp') +clean +runApp('shiny_R/DisHet_shinyapp') +runApp('shiny_R/DisHet_shinyapp') +getwd() +load("/home/danni/shiny_R/DisHet_shinyapp/eTME_signatures.RData") +head(isfar) +head(eTME_signatures) +load("/home/danni/shiny_R/DisHet_shinyapp/DisHet_App_example.RData") +head(DisHet_App_example) +head(DisHet_App_example) +load("/home/danni/shiny_R/DisHet_shinyapp/DisHet_App_example.RData") +head(DisHet_App_example) shiny::runApp('shiny_R/rnaseq/vizapp') -runApp('shiny_R/rnaseq/vizapp') diff --git a/vizapp/server.R b/vizapp/server.R index 31b788afc78dfb5ac7435e96bcdcab8bc3e5d8a1..7e0b4fd05a56011af41bb9c6ff8ed98796ed1221 100644 --- a/vizapp/server.R +++ b/vizapp/server.R @@ -10,8 +10,8 @@ library("gplots") shinyServer(function(input, output, session) { - #data.dir <- Sys.getenv('outputDir') - data.dir <-"../../vizapp/workflow_322_output" + data.dir <- Sys.getenv('outputDir') + #data.dir <-"../../vizapp/workflow_322_output" rda.dir <- data.dir symsyn <- read.table(file='symbol2synonym.txt',header=FALSE) names(symsyn) <- c('symbol','synonyms') diff --git a/vizapp/www/style.css b/vizapp/www/style.css index cd2a65da0aec7c1a6dedae9c80034b9d14f8b1ce..f16eeff91e045f6b57b97a528b89c4c24552c2b2 100755 --- a/vizapp/www/style.css +++ b/vizapp/www/style.css @@ -26,13 +26,20 @@ label.checkbox { } select { - max-width: 200px; + max-width: 300px; } .selectize-input { - max-width: 200px; + max-width: 350px; + padding: 6px 5px; +} +.selectize-control.single .selectize-input:after{ + border-style: none; + border-color: transparent; +} +.selectize-dropdown [data-selectable], .selectize-dropdown .optgroup-header { + padding: 3px 5px; } - pre { overflow: auto; word-wrap: normal;