diff --git a/.gitmodules b/.gitmodules
new file mode 100644
index 0000000000000000000000000000000000000000..0242dee412031e1290cd19266bcb68035939fcaf
--- /dev/null
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "workflow/process_scripts"]
+	path = workflow/process_scripts
+	url = git@git.biohpc.swmed.edu:ngsclialab/process_scripts.git
diff --git a/workflow/process_scripts b/workflow/process_scripts
new file mode 160000
index 0000000000000000000000000000000000000000..e5e905a0ada2d2a93ff0ed59b2fdf022a56c7464
--- /dev/null
+++ b/workflow/process_scripts
@@ -0,0 +1 @@
+Subproject commit e5e905a0ada2d2a93ff0ed59b2fdf022a56c7464