From 6417cd7bf3004fa52ac11ab99acc248639defbfb Mon Sep 17 00:00:00 2001
From: Brandi Cantarel <brandi.cantarel@utsouthwestern.edu>
Date: Mon, 24 May 2021 08:32:12 -0500
Subject: [PATCH] update testing
---
testing/run_all_tests.sh | 8 +++++++-
.../{human_pe_test/run_test.sh => run_human_pe_test.sh} | 0
.../{mouse_se_test/run_test.sh => run_mouse_se_test.sh} | 0
3 files changed, 7 insertions(+), 1 deletion(-)
rename testing/{human_pe_test/run_test.sh => run_human_pe_test.sh} (100%)
rename testing/{mouse_se_test/run_test.sh => run_mouse_se_test.sh} (100%)
diff --git a/testing/run_all_tests.sh b/testing/run_all_tests.sh
index 62911f8..2b9cef3 100644
--- a/testing/run_all_tests.sh
+++ b/testing/run_all_tests.sh
@@ -1,8 +1,14 @@
#!/bin/bash
baseDir="`dirname \"$0\"`"
-
+mkdir ${baseDir}/mouse_se_test
cd ${baseDir}/mouse_se_test/
+cp ${baseDir}/run_mouse_se_test.sh ${baseDir}/mouse_se_test/run_test.sh
+ln -s /project/shared/bicf_workflow_ref/seqprg/singularity/goalconsortium-*.img .
sbatch -p 32GB,super run_test.sh
+
+mkdir ${baseDir}/human_pe_test
cd ${baseDir}/human_pe_test/
+cp ${baseDir}/run_human_pe_test.sh ${baseDir}/human_pe_test/run_test.sh
+ln -s /project/shared/bicf_workflow_ref/seqprg/singularity/goalconsortium-*.img .
sbatch -p 32GB,super run_test.sh
diff --git a/testing/human_pe_test/run_test.sh b/testing/run_human_pe_test.sh
similarity index 100%
rename from testing/human_pe_test/run_test.sh
rename to testing/run_human_pe_test.sh
diff --git a/testing/mouse_se_test/run_test.sh b/testing/run_mouse_se_test.sh
similarity index 100%
rename from testing/mouse_se_test/run_test.sh
rename to testing/run_mouse_se_test.sh
--
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