From 5058b6cb26eda2c458f90fc6f7125330cd7dfcfd Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Tue, 11 Jun 2019 14:41:37 -0500
Subject: [PATCH] Fix CI

---
 .gitlab-ci.yml | 2 +-
 .gitmodules    | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index dd0031b..1e24442 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -6,8 +6,8 @@ variables:
 
 before_script:
   - module load nextflow/0.31.0
-  - git submodule update --init --recursive
   - git submodule sync --recursive
+  - git submodule update --init --recursive
 
 stages:
   - integration
diff --git a/.gitmodules b/.gitmodules
index 62a554c..0eb704c 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,3 +1,3 @@
 [submodule "workflow/process_scripts"]
 	path = workflow/process_scripts
-	url = git@git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts.git
+	url = ../process_scripts.git
-- 
GitLab