From 2a49ed989deea3c44f28d880fd010fed2a56ccd4 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 17 May 2021 21:58:22 -0500
Subject: [PATCH] Fix syntaxt for mouse config.
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c145710..eb44569 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -21,6 +21,6 @@ test_human:
test_mouse:
stage: integration
script:
- - nextflow run nextflow.config -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/mouse/GRCm38 --markdups null --output mouse_output
+ - nextflow run -c nextflow.config -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/mouse/GRCm38 --markdups null --output mouse_output
artifacts:
expire_in: 2 days
--
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