updating process scripts

README.md

 ## RNASeq Analysis Worklow
 
 ```
-module load nextflow/0.24.1-SNAPSHOT
+module load nextflow
 nextflow run workflow/main.nf
 ```

workflow/main.nf

@@ -201,14 +201,15 @@ process statanal {
   file "*.txt" into txtfiles
   file "*.png" into psfiles
   file("bg.rda") into rdafiles
+  file("geneset.shiny.gmt") into gmtfile
   when:
   script:
   if (params.dea == 'skip')
-  """
   perl $baseDir/scripts/concat_cts.pl -o ./ *.cts
   perl $baseDir/scripts/concat_fpkm.pl -o ./ *.fpkm.txt
   touch empty.png
   touch bg.rda
+  cp geneset.gmt geneset.shiny.gmt
   """
   else
   """

process_scripts @ 75a4aa68

-Subproject commit 636e989b65cc76352111cedac9a8762fbe570384
+Subproject commit 75a4aa688f82c607794e109e4ee0ec8e12418a2d