Commit 49a00b5a authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Update loading libraries.

parent af26cbbe
Pipeline #7196 passed with stage
in 3 seconds
......@@ -3,9 +3,6 @@ Sys.setenv(https_proxy="proxy.swmed.edu:3128")
Sys.setenv(http_proxy="proxy.swmed.edu:3128")
chooseCRANmirror(ind=1)
dir.create("~/R")
dir.create("~/R/methylation_pipeline_libs")
.libPaths("~/R/methylation_pipeline_libs")
# Load libraries
if(!require("methylKit")){
if (!requireNamespace("BiocManager", quietly = TRUE))
......@@ -29,9 +26,7 @@ library(methylKit)
library(argparse)
library(htmltools)
library(chromoMap)
#source("/work/BICF/s181385/methylation_test_data/chromoMap.R")
#args <- commandArgs(TRUE)
# Create parser object
parser <- ArgumentParser()
......
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