Commit fa258f22 authored by Venkat Malladi's avatar Venkat Malladi

remove work directory.

parent ba0e0850
Pipeline #6412 failed with stages
in 172 minutes and 21 seconds
......@@ -41,8 +41,7 @@ single_end_mouse:
- nextflow run workflow/main.nf --astrocyte true
- pytest -m singleend
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
paired_end_human:
stage: single
......@@ -54,8 +53,7 @@ paired_end_human:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
single_end_single_control:
stage: single
......@@ -67,8 +65,7 @@ single_end_single_control:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
- pytest -m singlecontrol
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
single_end_diff:
stage: multiple
......@@ -81,8 +78,7 @@ single_end_diff:
- pytest -m singleend
- pytest -m singlediff
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
paired_end_diff:
only:
......@@ -93,8 +89,7 @@ paired_end_diff:
- pytest -m pairedend
- pytest -m paireddiff
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
single_end_skip:
stage: skip
......@@ -104,8 +99,7 @@ single_end_skip:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
- pytest -m singleskip_true
after_script:
when: on_success
- rm -rf work/
- rm -rf work/
cleanup_job:
......
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