Commit e6b416e5 authored by Venkat Malladi's avatar Venkat Malladi

Update reference and version.

parent bb5133f0
Pipeline #7471 passed with stages
in 2861 minutes and 4 seconds
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All notable changes to this project will be documented in this file.
## [publish_1.1.2 ] - 2020-06-22
- Add pipeline tracking
## [publish_1.1.1 ] - 2020-04-23
### Added
- Add Nextflow to references.md
......
# **ChIP-seq Manual**
## Version 1.1.1
## April 22, 2020
## Version 1.1.2
## June 21, 2020
# BICF ChIP-seq Pipeline
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......@@ -52,7 +52,7 @@
* Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354)
17. **BICF ChIP-seq Analysis Workflow**:
* Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.1). Zenodo. doi:[10.5281/zenodo.3759481](https://doi.org/10.5281/zenodo.3759481)
* Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.2). Zenodo. doi:[10.5281/zenodo.3903277](https://doi.org/10.5281/zenodo.3903277)
18. **Nextflow**:
* Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., and Notredame, C. 2017. Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316.
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......@@ -121,7 +121,7 @@ process trackStart {
"astrocyte": ${params.astrocyte}, \
"status": "started", \
"nextflowVersion": "${workflow.nextflow.version}", \
"pipelineVersion": "1.1.1", \
"pipelineVersion": "1.1.2", \
"ci": ${params.ci}, \
"dev": ${params.dev}}' \
"https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
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......@@ -25,7 +25,7 @@ manifest {
name = 'chipseq_analysis'
description = 'BICF ChIP-seq Analysis Workflow.'
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis'
version = '1.1.1'
version = '1.1.2'
mainScript = 'main.nf'
nextflowVersion = '>=0.31.0'
}
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