Commit a1d4744c authored by Venkat Malladi's avatar Venkat Malladi

Merge branch '80-concurrent_issue' into ci-merge-test

parents ad917147 24f3252e
Pipeline #6416 canceled with stages
in 299 minutes and 11 seconds
......@@ -40,8 +40,6 @@ single_end_mouse:
script:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --astrocyte true
- pytest -m singleend
after_script:
- rm -rf work/
paired_end_human:
stage: single
......@@ -52,8 +50,6 @@ paired_end_human:
script:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend
after_script:
- rm -rf work/
single_end_single_control:
stage: single
......@@ -64,8 +60,6 @@ single_end_single_control:
script:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
- pytest -m singlecontrol
after_script:
- rm -rf work/
single_end_diff:
stage: multiple
......@@ -77,8 +71,6 @@ single_end_diff:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false
- pytest -m singleend
- pytest -m singlediff
after_script:
- rm -rf work/
paired_end_diff:
only:
......@@ -88,8 +80,6 @@ paired_end_diff:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend
- pytest -m paireddiff
after_script:
- rm -rf work/
single_end_skip:
stage: skip
......@@ -98,8 +88,6 @@ single_end_skip:
script:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
- pytest -m singleskip_true
after_script:
- rm -rf work/
cleanup_job:
......
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