Commit 4651d5e5 authored by Venkat Malladi's avatar Venkat Malladi

Merge branch '78-diffbind_paired_end' into 'master'

Resolve "Paired-end Diffbind peaks gives different answer" after changing random

Closes #78

See merge request !69
parents df7ed9bf 76777f0c
Pipeline #6591 canceled with stages
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......@@ -58,8 +58,6 @@ single_end_single_control:
single_end_diff:
stage: multiple
only:
- branches
except:
- master
script:
- NXF_OPTS="-Dleveldb.mmap=false" nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false
......@@ -68,6 +66,8 @@ single_end_diff:
paired_end_diff:
only:
- branches
except:
- master
stage: multiple
script:
......
......@@ -71,4 +71,4 @@ def test_diffbind_pairedend_single_rep():
assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.bed'))
diffbind_file = test_output_path + 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.csv'
assert os.path.exists(diffbind_file)
assert utils.count_lines(diffbind_file) >= 65182
assert utils.count_lines(diffbind_file) >= 65124
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