Merge requests · BICF / Astrocyte / chipseq_analysis

Merge trains

25 pairedend qc

!15 · created Jan 05, 2019 by Venkat Malladi master
- Merged
- 1
updated Jan 06, 2019
27 pdfs plots

!19 · created Jan 31, 2019 by Venkat Malladi master
updated Jan 31, 2019
Added new Docker file for motif search (named meme-5.5.4) installed from...

!76 · created Oct 16, 2024 by Thamer Alsulaiman master
updated Feb 28, 2025
Add in experiment_id and check to see if unique replicate ids are given.

!7 · created Oct 11, 2017 by Venkat Malladi master
updated Oct 11, 2017
Add in initial template.

!45 · created May 15, 2019 by Venkat Malladi master
enhancement
updated May 15, 2019
Add in pipelinetracking. 0 of 1 checklist item completed

!70 · created Jun 21, 2020 by Venkat Malladi
- Merged
- 1
updated Jun 23, 2020
Add in python3 for motif serach.

!40 · created May 15, 2019 by Venkat Malladi 1.0.4 master
bug
updated May 15, 2019
Add option for outdir.

!16 · created Jan 06, 2019 by Venkat Malladi master
- Merged
- 1
updated Jan 06, 2019
Changed singularity container to allow for rendering of references. 3 of 3 checklist items completed

!65 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 18, 2020
Ci merge test

!68 · created Mar 28, 2020 by Venkat Malladi master
- Merged
- 6
updated Apr 16, 2020
Containerized version with meme-chip 5.5.4

!75 · created Sep 05, 2024 by Thamer Alsulaiman
updated Feb 28, 2025
Draft: Resolve "Update nf-tower token"

!74 · created Jul 25, 2021 by Venkat Malladi 2.0.0
critical
updated Jul 28, 2021
Fix astrocyte yml name fix.

!37 · created May 06, 2019 by Venkat Malladi master
bug
- Merged
updated May 06, 2019
Fix fasta file refernce and add check for correct genome version 6 of 6 checklist items completed

!49 · created May 31, 2019 by Jeremy Mathews 1.0.6 master
bug enhancement
updated May 31, 2019
Fix spacing.

!48 · created May 17, 2019 by Venkat Malladi master
documentation
- Merged
updated May 17, 2019
Fix variable assignment.

!29 · created Apr 22, 2019 by Venkat Malladi 1.0.0 master
bug
updated Apr 22, 2019
Issue3087 annotation fix 0 of 7 checklist items completed

!72 · created Aug 07, 2020 by Spencer Barnes
updated Aug 07, 2020
Issues #57 and #59 cause Spencer said today 3 of 3 checklist items completed

!50 · created Jul 08, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 1
updated Jul 09, 2019
Merge develop into master

!1 · created Feb 10, 2017 by Beibei Chen master
- Merged
updated Feb 10, 2017
Move single-end to run on astrocyte.

!28 · created Apr 22, 2019 by Venkat Malladi 1.0.0 master
bug
updated Apr 22, 2019