chipseq_analysis merge requestshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests2019-01-11T10:48:25-06:00https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/17WIP: Resolve "Add in current chip-analysis functionality."2019-01-11T10:48:25-06:00Venkat MalladiWIP: Resolve "Add in current chip-analysis functionality."Closes #15Closes #151.0.0https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/33WIP: Resolve "Update documentation"2019-04-29T10:16:18-05:00Holly RuessWIP: Resolve "Update documentation"Closes #8Closes #81.0.0https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/34WIP: Resolve "Update documentation"2019-04-29T10:16:27-05:00Holly RuessWIP: Resolve "Update documentation"Review documentation and when complete give to Venkat to mergeReview documentation and when complete give to Venkat to merge1.0.0Spencer BarnesSpencer Barneshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/51Update gitignore with nextflow and update software reference test2019-07-10T08:26:09-05:00Jeremy MathewsUpdate gitignore with nextflow and update software reference testCloses #55Closes #551.0.6Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/71Update astrocyte to 0.3.12020-07-01T14:34:44-05:00Venkat MalladiUpdate astrocyte to 0.3.1
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Closes #842.0.0Jonathan GesellJonathan Gesellhttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/57Resolve "annotate peaks"2019-08-12T08:32:55-05:00Jeremy MathewsResolve "annotate peaks"Closes #47
Change Annotate peaks step to call reference from gencode gtf files instead of TxDb and org libraries.
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Change Annotate peaks step to call reference from gencode gtf files instead of TxDb and org libraries.
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- [X] `CHANGELOG.md` is updated1.1.1Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/55Resolve "add plotProfile"2019-07-19T08:32:16-05:00Jeremy MathewsResolve "add plotProfile"Closes #29 and #61
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1.1.1Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/54Resolve "Single control or experiment fails at call peaks macs"2019-07-30T10:01:22-05:00Jeremy MathewsResolve "Single control or experiment fails at call peaks macs"Closes #58
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1.0.6Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/53Update gitignore with nextflow and update software reference test2019-07-10T09:13:01-05:00Jeremy MathewsUpdate gitignore with nextflow and update software reference testCloses #55Closes #551.0.6Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/50Issues #57 and #59 cause Spencer said today2019-07-09T08:58:32-05:00Jeremy MathewsIssues #57 and #59 cause Spencer said todayCloses #57 and #59
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1.0.6Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/49Fix fasta file refernce and add check for correct genome version2019-05-31T08:29:32-05:00Jeremy MathewsFix fasta file refernce and add check for correct genome versionCloses #55
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1.0.6Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/47Resolve "Add license"2019-05-17T12:19:47-05:00Venkat MalladiResolve "Add license"Closes #53
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- [x] `CHANGELOG.md` is updatedVenkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/45Add in initial template.2019-05-15T13:19:11-05:00Venkat MalladiAdd in initial template.Closes #51Closes #51Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/44Resolve "Change Tests for Peak comparison to be greater than or equal to"2019-05-15T10:02:03-05:00Venkat MalladiResolve "Change Tests for Peak comparison to be greater than or equal to"Closes #50Closes #501.0.4Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/41Resolve "Fix Astrocyte links"2019-05-15T09:28:20-05:00Venkat MalladiResolve "Fix Astrocyte links"Closes #46Closes #461.0.4Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/35Resolve "Update documentation"2019-05-06T11:13:09-05:00Venkat MalladiResolve "Update documentation"Review and assign to Venkat
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Closes #81.0.0Spencer BarnesSpencer Barneshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/26Resolve "Add multiqc summary of data"2019-04-21T12:06:01-05:00Venkat MalladiResolve "Add multiqc summary of data"Closes #19Closes #191.0.0Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/23Resolve "Output software versions and methods and references"2019-04-18T15:36:36-05:00Venkat MalladiResolve "Output software versions and methods and references"Closes #21Closes #211.0.0Venkat MalladiVenkat Malladihttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/merge_requests/18Resolve "Add in current chip-analysis functionality."2019-01-11T10:48:12-06:00Venkat MalladiResolve "Add in current chip-analysis functionality."Closes #15 Closes #15 1.0.0Venkat MalladiVenkat Malladi