Issues · BICF / Astrocyte / chipseq_analysis

New issue

Add mapping and trimming

#3 · created Sep 30, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Bam Stats and Filter

#4 · created Oct 09, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Add in grouping variable

#10 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 11, 2017
Update deeptools

#6 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug enhancement
- CLOSED
- 1
- 0
updated Oct 18, 2017
Remove qc_fastq.py

#11 · created Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 18, 2017
Make tagAlign files

#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Include Phantompeakqualtools step

#5 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Oct 24, 2017
Pool and Pseudoreplication

#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Add in Macs2 support

#7 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Nov 20, 2017
Fix Unreplicated experiment naive overlap

#16 · created Apr 10, 2018 by Venkat Malladi
- CLOSED
- 1
updated Dec 16, 2018
invalid option in map_qc.py

#20 · created Dec 03, 2018 by Spencer Barnes bug
- CLOSED
- 1
updated Jan 05, 2019
broken link in documentation

#18 · created Jun 13, 2018 by Spencer Barnes 1.0.0 bug
- CLOSED
- 1
updated Jan 05, 2019
experimentQC plots are empty in PE

#25 · created Jan 03, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Jan 06, 2019
Add defined output folder

#22 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 0
updated Jan 06, 2019
Add in current chip-analysis functionality.

#15 · created Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 2
- 1
updated Jan 11, 2019
Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf

#27 · created Jan 16, 2019 by Holly Ruess 1.0.0
- CLOSED
- 1
updated Jan 31, 2019
Use SampleIds/ Experiment Id as file names throughtout pipeline

#23 · created Dec 26, 2018 by Venkat Malladi 1.0.0 critical
- CLOSED
- 1
- 0
updated Mar 10, 2019
skip motif search and diff bind

#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
New folders for all steps

#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
Last 3 steps don't go into user defined output directory

#28 · created Jan 23, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Apr 03, 2019