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  • BICF
  • Astrocyte
  • chipseq_analysis
  • Issues

  • Open 19
  • Closed 73
  • All 92
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Add in Fastqc
    #1 · created Aug 30, 2017 by Venkat Malladi   rejected
    • CLOSED
    • 1
    • 1
    updated Apr 16, 2020
  • Update test data
    #2 · created Sep 28, 2017 by Venkat Malladi   enhancement
    • CLOSED
    • 1
    updated May 20, 2019
  • Add mapping and trimming
    #3 · created Sep 30, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 11, 2017
  • Bam Stats and Filter
    #4 · created Oct 09, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 11, 2017
  • Include Phantompeakqualtools step
    #5 · created Oct 11, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 1
    updated Oct 24, 2017
  • Update deeptools
    #6 · created Oct 11, 2017 by Venkat Malladi   1.0.0   bug enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 18, 2017
  • Add in Macs2 support
    #7 · created Oct 11, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Nov 20, 2017
  • Update documentation
    #8 · created Oct 11, 2017 by Venkat Malladi   1.0.0   documentation enhancement
    • CLOSED
    • 2
    • 0
    updated May 06, 2019
  • Add in blacklist
    #9 · created Oct 11, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add in grouping variable
    #10 · created Oct 11, 2017 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Oct 11, 2017
  • Remove qc_fastq.py
    #11 · created Oct 17, 2017 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Oct 18, 2017
  • Make tagAlign files
    #12 · created Oct 18, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 23, 2017
  • Pool and Pseudoreplication
    #13 · created Oct 25, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 30, 2017
  • Add in peak call with SPP and IDR
    #14 · created Nov 14, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add in current chip-analysis functionality.
    #15 · created Nov 20, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 2
    • 1
    updated Jan 11, 2019
  • Fix Unreplicated experiment naive overlap
    #16 · created Apr 10, 2018 by Venkat Malladi
    • CLOSED
    • 1
    updated Dec 16, 2018
  • Move to use Process scripts
    #17 · created May 08, 2018 by Venkat Malladi   enhancement rejected
    • CLOSED
    • 1
    updated Mar 20, 2020
  • broken link in documentation
    #18 · created Jun 13, 2018 by Spencer Barnes   1.0.0   bug
    • CLOSED
    • 1
    updated Jan 05, 2019
  • Add multiqc summary of data
    #19 · created Aug 11, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 2
    updated Apr 21, 2019
  • invalid option in map_qc.py
    #20 · created Dec 03, 2018 by Spencer Barnes   bug
    • CLOSED
    • 1
    updated Jan 05, 2019
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