Issues · BICF / Astrocyte / chipseq_analysis

New issue

Add in Fastqc

#1 · created Aug 30, 2017 by Venkat Malladi rejected
- CLOSED
- 1
- 1
updated Apr 16, 2020
Update test data

#2 · created Sep 28, 2017 by Venkat Malladi enhancement
- CLOSED
- 1
updated May 20, 2019
Add mapping and trimming

#3 · created Sep 30, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Bam Stats and Filter

#4 · created Oct 09, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Include Phantompeakqualtools step

#5 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Oct 24, 2017
Update deeptools

#6 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug enhancement
- CLOSED
- 1
- 0
updated Oct 18, 2017
Add in Macs2 support

#7 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Nov 20, 2017
Update documentation

#8 · created Oct 11, 2017 by Venkat Malladi 1.0.0 documentation enhancement
- CLOSED
- 2
- 0
updated May 06, 2019
Add in blacklist

#9 · created Oct 11, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in grouping variable

#10 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 11, 2017
Remove qc_fastq.py

#11 · created Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 18, 2017
Make tagAlign files

#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Pool and Pseudoreplication

#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Add in peak call with SPP and IDR

#14 · created Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in current chip-analysis functionality.

#15 · created Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 2
- 1
updated Jan 11, 2019
Fix Unreplicated experiment naive overlap

#16 · created Apr 10, 2018 by Venkat Malladi
- CLOSED
- 1
updated Dec 16, 2018
Move to use Process scripts

#17 · created May 08, 2018 by Venkat Malladi enhancement rejected
- CLOSED
- 1
updated Mar 20, 2020
broken link in documentation

#18 · created Jun 13, 2018 by Spencer Barnes 1.0.0 bug
- CLOSED
- 1
updated Jan 05, 2019
Add multiqc summary of data

#19 · created Aug 11, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2019
invalid option in map_qc.py

#20 · created Dec 03, 2018 by Spencer Barnes bug
- CLOSED
- 1
updated Jan 05, 2019