Issues · BICF / Astrocyte / chipseq_analysis

New issue

Missing modules

#38 · created Apr 23, 2019 by Venkat Malladi 1.0.0 bug
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updated Apr 23, 2019
Fix software versions test

#37 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
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updated Apr 22, 2019
Update Astrocyte documentation and errors

#36 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
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updated Apr 22, 2019
Fix astrocyte run

#35 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
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updated Apr 22, 2019
Fix tests for software versions

#34 · created Apr 19, 2019 by Venkat Malladi 1.0.0 bug
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updated Apr 20, 2019
New folders for all steps

#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
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updated Mar 16, 2019
skip motif search and diff bind

#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
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updated Mar 12, 2019
Last 3 steps don't go into user defined output directory

#28 · created Jan 23, 2019 by Holly Ruess 1.0.0 bug
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updated Apr 03, 2019
Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf

#27 · created Jan 16, 2019 by Holly Ruess 1.0.0
- CLOSED
- 1
updated Jan 31, 2019
experimentQC plots are empty in PE

#25 · created Jan 03, 2019 by Holly Ruess 1.0.0 bug
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updated Jan 06, 2019
Test Astrocyte

#24 · created Dec 27, 2018 by Venkat Malladi 1.0.0 critical
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updated Apr 21, 2019
Use SampleIds/ Experiment Id as file names throughtout pipeline

#23 · created Dec 26, 2018 by Venkat Malladi 1.0.0 critical
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updated Mar 10, 2019
Add defined output folder

#22 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
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updated Jan 06, 2019
Output software versions and methods and references

#21 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
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- 1
updated Apr 18, 2019
Add multiqc summary of data

#19 · created Aug 11, 2018 by Venkat Malladi 1.0.0 enhancement
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updated Apr 21, 2019
broken link in documentation

#18 · created Jun 13, 2018 by Spencer Barnes 1.0.0 bug
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updated Jan 05, 2019
Add in current chip-analysis functionality.

#15 · created Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
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updated Jan 11, 2019
Pool and Pseudoreplication

#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
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updated Oct 30, 2017
Make tagAlign files

#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
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updated Oct 23, 2017
Remove qc_fastq.py

#11 · created Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
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updated Oct 18, 2017