Issues · BICF / Astrocyte / chipseq_analysis

New issue

Update version of multiqc

#76 · created Feb 10, 2020 by Holly Ruess 1.1.0 bug enhancement
- CLOSED
- 1
updated Mar 15, 2020
Single control or experiment fails at call peaks macs

#58 · created Jul 02, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
Fail Pipeline if less reads map to genome

#55 · created May 20, 2019 by Jeremy Mathews 1.0.6 enhancement
- CLOSED
- 3
- 2
updated Jul 10, 2019
Change Tests for Peak comparison to be greater than or equal to

#50 · created May 14, 2019 by Venkat Malladi 1.0.4 enhancement
- CLOSED
- 1
- 0
updated May 15, 2019
annotate peaks

#47 · created May 13, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 20, 2020
Fix Astrocyte links

#46 · created May 10, 2019 by Holly Ruess 1.0.4 enhancement
- CLOSED
- 1
- 1
updated May 15, 2019
Remove spaces and "weird characters" from design files

#45 · created May 10, 2019 by Holly Ruess 1.1.0 bug enhancement
- CLOSED
- 2
updated Jul 30, 2019
skip motif search and diff bind

#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
add plotProfile

#29 · created Jan 23, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
Add defined output folder

#22 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 0
updated Jan 06, 2019
Output software versions and methods and references

#21 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Apr 18, 2019
Add multiqc summary of data

#19 · created Aug 11, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2019
Add in current chip-analysis functionality.

#15 · created Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 2
- 1
updated Jan 11, 2019
Pool and Pseudoreplication

#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Make tagAlign files

#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Update documentation

#8 · created Oct 11, 2017 by Venkat Malladi 1.0.0 documentation enhancement
- CLOSED
- 2
- 0
updated May 06, 2019
Add in Macs2 support

#7 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Nov 20, 2017
Update deeptools

#6 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug enhancement
- CLOSED
- 1
- 0
updated Oct 18, 2017
Include Phantompeakqualtools step

#5 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Oct 24, 2017
Bam Stats and Filter

#4 · created Oct 09, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017