Issues · BICF / Astrocyte / chipseq_analysis

New issue

Update test data

#2 · created Sep 28, 2017 by Venkat Malladi enhancement
- CLOSED
- 1
updated May 20, 2019
Add mapping and trimming

#3 · created Sep 30, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Bam Stats and Filter

#4 · created Oct 09, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Include Phantompeakqualtools step

#5 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Oct 24, 2017
Update deeptools

#6 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug enhancement
- CLOSED
- 1
- 0
updated Oct 18, 2017
Add in Macs2 support

#7 · created Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Nov 20, 2017
Update documentation

#8 · created Oct 11, 2017 by Venkat Malladi 1.0.0 documentation enhancement
- CLOSED
- 2
- 0
updated May 06, 2019
Add in blacklist

#9 · created Oct 11, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Make tagAlign files

#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Pool and Pseudoreplication

#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Add in peak call with SPP and IDR

#14 · created Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in current chip-analysis functionality.

#15 · created Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 2
- 1
updated Jan 11, 2019
Move to use Process scripts

#17 · created May 08, 2018 by Venkat Malladi enhancement rejected
- CLOSED
- 1
updated Mar 20, 2020
Add multiqc summary of data

#19 · created Aug 11, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2019
Output software versions and methods and references

#21 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Apr 18, 2019
Add defined output folder

#22 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 0
updated Jan 06, 2019
add plotProfile

#29 · created Jan 23, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
skip motif search and diff bind

#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
Optimizations

#39 · created Apr 23, 2019 by Jonathan Gesell 3.0.0 discussion enhancement
- 0
updated Jun 23, 2020
Remove spaces and "weird characters" from design files

#45 · created May 10, 2019 by Holly Ruess 1.1.0 bug enhancement
- CLOSED
- 2
updated Jul 30, 2019