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  • #84

Closed
Open
Opened Jun 19, 2020 by Venkat Malladi@venkat.malladiOwner

Track chip-seq usage

/*
 * trackStart: track start of pipeline
 */

process trackStart {
  script:
  """
  hostname
  ulimit -a
  export https_proxy=\${http_proxy}

  curl -H 'Content-Type: application/json' -X PUT -d '{ \
      "sessionId": "${workflow.sessionId}", \
      "pipeline": "atacseq_analysis", \
      "start": "${workflow.start}", \
      "astrocyte": ${params.astrocyte}, \
      "status": "started", \
      "nextflowVersion": "${workflow.nextflow.version}", \
      "pipelineVersion": "2.0.0", \
      "ci": ${params.ci}, \
      "dev": ${params.dev}}' \
  "https://xku43pcwnf.execute-api.us-east-1.amazonaws.com/ProdDeploy/pipeline-tracking"
  """
}
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Reference: BICF/Astrocyte/chipseq_analysis#84