chipseq_analysis issueshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues2020-06-23T15:52:34-05:00https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/64Containerization2020-06-23T15:52:34-05:00Jonathan GesellContainerizationContainerize as much of the ChipSeq pipeline as possible, perferably with one container per processContainerize as much of the ChipSeq pipeline as possible, perferably with one container per process3.0.0Jonathan GesellJonathan Gesellhttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/60Make both astrocyte compatable and other cluster compatable2020-06-23T15:51:53-05:00Holly RuessMake both astrocyte compatable and other cluster compatableWe need to move the module load from the main.nf into if astrocyte = True statement.We need to move the module load from the main.nf into if astrocyte = True statement.3.0.0Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/39Optimizations2020-06-23T15:51:07-05:00Jonathan GesellOptimizationsGeneral speed-ups and optimization of pipeline branches.General speed-ups and optimization of pipeline branches.3.0.0Jonathan GesellJonathan Gesellhttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/32Memory2020-06-23T15:56:18-05:00Venkat MalladiMemoryChange Python max mem to maybe 3/4 (test), for samtools sortChange Python max mem to maybe 3/4 (test), for samtools sort3.0.0Jonathan GesellJonathan Gesell