chipseq_analysis issueshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues2019-07-10T09:13:01-05:00https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/55Fail Pipeline if less reads map to genome2019-07-10T09:13:01-05:00Jeremy MathewsFail Pipeline if less reads map to genomePipeline fails due to selecting incorrect genome or bad fastq files. Currently runs pipeline till callPeaks. Add error check in mapPeaks to compare minimum mapped to percentage. Output possible reasons to output file.Pipeline fails due to selecting incorrect genome or bad fastq files. Currently runs pipeline till callPeaks. Add error check in mapPeaks to compare minimum mapped to percentage. Output possible reasons to output file.1.0.6Jeremy MathewsJeremy Mathewshttps://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/-/issues/56reference fasta file has wrong name2019-05-31T08:29:33-05:00Holly Ruessreference fasta file has wrong nameReference fasta file used in memechip is called genome.fa.txt. This appears in the main.nf file and may elsewhere. It should be genome.fa.
Also, since this error in memechip produces non-emptyp output files but the files are errors. We ...Reference fasta file used in memechip is called genome.fa.txt. This appears in the main.nf file and may elsewhere. It should be genome.fa.
Also, since this error in memechip produces non-emptyp output files but the files are errors. We need to integrate a solution to check if these files are not only produced and not empty, but that the contents of the files are correct1.0.6Jeremy MathewsJeremy Mathews